HHsearch alignment for GI: 254780229 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.04 Score=37.05 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=30.2
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf 8514895599428787703899999999996-79828996
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFC 453 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfV 453 (1775)
T Consensus 21 ~i~~Ge~~~i~G~nGaGKS-TLl~~l~gl~~~~~G~i~~~ 59 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKS-TLLRAIAGLLKPTSGEILID 59 (157)
T ss_pred EECCCCEEEEECCCCCCHH-HHHHHHHCCCCCCCCEEEEC
T ss_conf 9879979999878899989-99999958847996289999