HHsearch alignment for GI: 254780229 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.05 E-value=0.047 Score=36.35 Aligned_cols=74 Identities=27% Similarity=0.474 Sum_probs=46.1
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 4895599428787703899999999996-7982899601058999999864435844136540266110899999999
Q gi|254780229|r 418 NGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELHSHKVHKRAILDDLR 494 (1775)
Q Consensus 418 ~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleLHs~ka~k~~vl~~L~ 494 (1775)
T Consensus 81 pGSvvLlgGePGIGKS-TLLLQia~~la~~~~~vLYvSGEES~~Q-Ik~RA~RLg~~~~~l~l~s-et~le~Il~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKS-TLLLQVAARLAKRGGKVLYVSGEESPEQ-IKLRADRLGISTENLYLLA-ETNLEDILASIE 155 (372)
T ss_pred CCEEEEEECCCCCCHH-HHHHHHHHHHHHCCCCEEEEECHHHHHH-HHHHHHHHCCCCCCCEEEE-CCCHHHHHHHHH
T ss_conf 6717998259988688-9999999999863993899824567899-9989998587887727884-356999999999