HHsearch alignment for GI: 254780229 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.33 E-value=0.028 Score=38.73 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=26.2
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHH------CCCEEEEEECC
Q ss_conf 895599428787703899999999996------79828996010
Q gi|254780229|r 419 GKNLIIEGPPGTGKSQTITNIIAAAML------HGKKILFCAQK 456 (1775)
Q Consensus 419 g~~~vi~GPPGTGKSQTIaNlIa~~la------~Gk~VLfVaeK 456 (1775)
T Consensus 19 G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE 62 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 87999999999849999999999984247536789629999536