HHsearch alignment for GI: 254780229 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.91  E-value=0.0022  Score=50.27  Aligned_cols=50  Identities=26%  Similarity=0.452  Sum_probs=36.1

Q ss_pred             CEEEECCCCCCCHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf             5599428787703899-999999996798289960105899999986443584
Q gi|254780229|r  421 NLIIEGPPGTGKSQTI-TNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGL  472 (1775)
Q Consensus       421 ~~vi~GPPGTGKSQTI-aNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gL  472 (1775)
T Consensus         1 stLi~G~pGsGKT-~~a~qfl~~~a~~ge~~lyis~eE~~~~-l~~~~~~~g~   51 (187)
T cd01124           1 STLLSGGPGTGKT-TFALQFLYAGLARGEPGLYVTLEESPEE-LIENAESLGW   51 (187)
T ss_pred             CEEEEECCCCCHH-HHHHHHHHHHHHCCCCEEEEEECCCHHH-HHHHHHHCCC
T ss_conf             9158768999999-9999999999876997899995079999-9999998399