HHsearch alignment for GI: 254780229 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.91 E-value=0.0022 Score=50.27 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=36.1
Q ss_pred CEEEECCCCCCCHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 5599428787703899-999999996798289960105899999986443584
Q gi|254780229|r 421 NLIIEGPPGTGKSQTI-TNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGL 472 (1775)
Q Consensus 421 ~~vi~GPPGTGKSQTI-aNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gL 472 (1775)
T Consensus 1 stLi~G~pGsGKT-~~a~qfl~~~a~~ge~~lyis~eE~~~~-l~~~~~~~g~ 51 (187)
T cd01124 1 STLLSGGPGTGKT-TFALQFLYAGLARGEPGLYVTLEESPEE-LIENAESLGW 51 (187)
T ss_pred CEEEEECCCCCHH-HHHHHHHHHHHHCCCCEEEEEECCCHHH-HHHHHHHCCC
T ss_conf 9158768999999-9999999999876997899995079999-9999998399