HHsearch alignment for GI: 254780229 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.24 E-value=0.031 Score=38.31 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=28.8
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCC------CEEEEEE
Q ss_conf 489559942878770389999999999679------8289960
Q gi|254780229|r 418 NGKNLIIEGPPGTGKSQTITNIIAAAMLHG------KKILFCA 454 (1775)
Q Consensus 418 ~g~~~vi~GPPGTGKSQTIaNlIa~~la~G------k~VLfVa 454 (1775)
T Consensus 18 ~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyID 60 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 8839999999999899999999999854221169996199995