HHsearch alignment for GI: 254780229 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.74 E-value=0.0067 Score=45.19 Aligned_cols=39 Identities=28% Similarity=0.532 Sum_probs=31.6
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 489559942878770389999999999679828996010
Q gi|254780229|r 418 NGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQK 456 (1775)
Q Consensus 418 ~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK 456 (1775)
T Consensus 18 ~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 887999989999849999999999986369869999665