HHsearch alignment for GI: 254780229 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.74  E-value=0.0067  Score=45.19  Aligned_cols=39  Identities=28%  Similarity=0.532  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             489559942878770389999999999679828996010
Q gi|254780229|r  418 NGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQK  456 (1775)
Q Consensus       418 ~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK  456 (1775)
T Consensus        18 ~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE   56 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             887999989999849999999999986369869999665