HHsearch alignment for GI: 254780229 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.11 E-value=0.037 Score=37.46 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 851489559942878770389999999999679
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAMLHG 447 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~G 447 (1775)
T Consensus 22 ~i~~ge~~~l~G~NGsGKT-Tl~~~l~G~~~~~ 53 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKS-TLLKLIAGELEPD 53 (144)
T ss_pred EECCCCEEEEECCCCCCHH-HHHHHHHCCCCCC
T ss_conf 9879999999989998499-9999984898898