HHsearch alignment for GI: 254780229 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.87 E-value=0.061 Score=35.16 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=32.3
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEEC
Q ss_conf 8514895599428787703899999999996-7982899601
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQ 455 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVae 455 (1775)
T Consensus 22 ~v~~Gei~~liG~nGaGKS-TLl~~i~Gl~~p~~G~I~~~G~ 62 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKT-TLLKTIMGLLPPRSGSIRFDGR 62 (222)
T ss_pred EECCCCEEEEECCCCCCHH-HHHHHHHCCCCCCCEEEEECCE
T ss_conf 9889989999999998599-9999997798899609999999