HHsearch alignment for GI: 254780229 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.041 Score=36.95 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=32.1
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEEC
Q ss_conf 8514895599428787703899999999996-7982899601
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQ 455 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVae 455 (1775)
T Consensus 24 ~i~~Ge~i~ivG~sGsGKS-TLl~ll~gl~~p~~G~I~i~g~ 64 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKS-TLLKLLLRLYDPTSGEILIDGV 64 (171)
T ss_pred EECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCCEEEECCE
T ss_conf 9859989999999998399-9999997677589748999999