HHsearch alignment for GI: 254780229 and conserved domain: cd03253

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23  E-value=0.014  Score=41.95  Aligned_cols=39  Identities=33%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             HHHCCCCEEEECCCCCCCHHHHHHHHHHHH-HCCCEEEEEE
Q ss_conf             851489559942878770389999999999-6798289960
Q gi|254780229|r  415 DVINGKNLIIEGPPGTGKSQTITNIIAAAM-LHGKKILFCA  454 (1775)
Q Consensus       415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~l-a~Gk~VLfVa  454 (1775)
T Consensus        23 ~i~~Ge~v~ivG~sGsGKS-TLl~ll~gl~~p~~G~I~idg   62 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKS-TILRLLFRFYDVSSGSILIDG   62 (236)
T ss_pred             EECCCCEEEEECCCCCCHH-HHHHHHCCCCCCCCCEEEECC
T ss_conf             9869999999999999899-999997438548874899999