HHsearch alignment for GI: 254780229 and conserved domain: cd03279

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

Probab=96.64  E-value=0.0017  Score=51.29  Aligned_cols=27  Identities=48%  Similarity=0.746  Sum_probs=24.4

Q ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             55994287877038999999999967982
Q gi|254780229|r  421 NLIIEGPPGTGKSQTITNIIAAAMLHGKK  449 (1775)
Q Consensus       421 ~~vi~GPPGTGKSQTIaNlIa~~la~Gk~  449 (1775)
T Consensus        30 lflI~G~nGsGKS-TIlDAI~~aLY-Gk~   56 (213)
T cd03279          30 LFLICGPTGAGKS-TILDAITYALY-GKT   56 (213)
T ss_pred             EEEEECCCCCCHH-HHHHHHHHHHC-CCC
T ss_conf             8999889999788-99999999983-888