HHsearch alignment for GI: 254780229 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.028 Score=38.67 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=31.9
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEE
Q ss_conf 985148955994287877038999999999967-98289960
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLH-GKKILFCA 454 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~-Gk~VLfVa 454 (1775)
T Consensus 25 l~i~~Ge~~~iiGpsGsGKS-TLl~~i~Gl~~p~~G~I~~~G 65 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKS-TLLRIIAGLERPTSGEVLVDG 65 (220)
T ss_pred EEECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCCEEEECC
T ss_conf 89879989999999995799-999999759998873899999