HHsearch alignment for GI: 254780229 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.033 Score=38.01 Aligned_cols=40 Identities=33% Similarity=0.490 Sum_probs=32.1
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEE
Q ss_conf 98514895599428787703899999999996-798289960
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCA 454 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVa 454 (1775)
T Consensus 45 l~i~~GE~~~ivG~SGsGKS-TLLr~i~GL~~p~~G~I~~~G 85 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKS-TLLRCINRLIEPTSGKVLIDG 85 (269)
T ss_pred EEECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCEEEEECC
T ss_conf 58889999999989984899-999999759999975999999