HHsearch alignment for GI: 254780229 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.012 Score=42.38 Aligned_cols=46 Identities=28% Similarity=0.537 Sum_probs=33.9
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEECCHHHH
Q ss_conf 985148955994287877038999999999967-98289960105899
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLH-GKKILFCAQKMAAI 460 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~-Gk~VLfVaeK~aAL 460 (1775)
T Consensus 23 ~~v~~Ge~~~iiGpSGsGKS-Tll~~i~Gl~~p~~G~I~~~g~~i~~~ 69 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKT-TLLRLIAGLERPDSGTILFGGEDATDV 69 (239)
T ss_pred EEECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCEEEEECCEECCCC
T ss_conf 69889989999999997799-999999769999863999999999999