HHsearch alignment for GI: 254780229 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.012 Score=42.40 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=35.5
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
Q ss_conf 851489559942878770389999999999679-82899601058999999
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAMLHG-KKILFCAQKMAAIEVVR 464 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~G-k~VLfVaeK~aALdVV~ 464 (1775)
T Consensus 20 ~i~~Ge~~~ilGpSGsGKS-TLl~li~Gl~~p~sG~I~i~G~di~~~~~~~ 69 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKS-TLLNLIAGFETPQSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred EECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCEEEEECCEECCCCCHHH
T ss_conf 9889989999999995599-9999997699988529999999999999889