HHsearch alignment for GI: 254780229 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.

Probab=94.16  E-value=0.08  Score=33.94  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=24.6

Q ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             98514895599428787703899999999996
Q gi|254780229|r  414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAML  445 (1775)
Q Consensus       414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la  445 (1775)
T Consensus        17 ~~a~~~~pVLI~GE~GtGK~-~lAr~IH~~S~   47 (168)
T pfam00158        17 RVAPTDATVLITGESGTGKE-LFARAIHQLSP   47 (168)
T ss_pred             HHHCCCCCEEEECCCCCCHH-HHHHHHHHHCC
T ss_conf             99588998899899988889-99999998524