HHsearch alignment for GI: 254780229 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=97.51 E-value=0.00069 Score=55.45 Aligned_cols=63 Identities=24% Similarity=0.424 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHH-HHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf 689999985148955994287877038999-99999996--7982899601058999999864435
Q gi|254780229|r 408 SQHSAVIDVINGKNLIIEGPPGTGKSQTIT-NIIAAAML--HGKKILFCAQKMAAIEVVRHRLEKA 470 (1775)
Q Consensus 408 SQ~~av~~~~~g~~~vi~GPPGTGKSQTIa-NlIa~~la--~Gk~VLfVaeK~aALdVV~~RL~~~ 470 (1775)
T Consensus 3 ~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~ 68 (167)
T pfam00270 3 IQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKL 68 (167)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 599999999769978998899975899999999999874778987999906088888999886432