HHsearch alignment for GI: 254780229 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=98.13 E-value=0.00012 Score=63.24 Aligned_cols=150 Identities=23% Similarity=0.258 Sum_probs=95.6
Q ss_pred CCCEEEECCHHHCCHH--HHHHHHHHC-CEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCC---
Q ss_conf 4107886063236989--988988611-8289960778668620110001344443201101440007999997558---
Q gi|254780229|r 1361 KFDLVIMDESSQIKPE--DALGVIARG-KQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFS--- 1434 (1775)
Q Consensus 1361 ~FD~VI~DEASQ~~~~--~al~al~ra-kqvvvvGD~kQlpPt~ff~~~~~~~~~~~~~~~~~~~eSild~~~~~~p--- 1434 (1775)
T Consensus 212 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~l~~VGD~~QSIY-~-FRGA--------------d-~~~~~~f~~~~~~~~ 274 (494)
T pfam00580 212 RFKYILVDEFQDTNPIQYELLKLLAGGHPNLFLVGDPDQSIY-G-FRGA--------------D-IENILKFEKDFPAAK 274 (494)
T ss_pred HCCEEECHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEE-E-CCCC--------------C-HHHHHHHHHHCCCCC
T ss_conf 072654034302649999999998658983999817971442-0-1799--------------9-699999998666566
Q ss_pred CCEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC--
Q ss_conf 7520530557997899999850369804764687766--666884899728972178889899999999999995318--
Q gi|254780229|r 1435 MRRLQWHYRSLNENLIACSNYYFYDNSLIVFPSPYTS--VDRYGVGFTHVKNGVVVDQGNPEEARVIALAVKDHALRY-- 1510 (1775)
Q Consensus 1435 ~~~L~~HyRs~~e~lI~fSN~~fY~~~L~~~psp~~~--~~~~~v~~~~v~~g~~~~~~N~~EA~~vv~~v~~~~~~~-- 1510 (1775)
T Consensus 275 ~i~L~~NyRS~~~-Il~~aN~l~~~~~~~~~~~~l~~~~~~~~~v~~-------~~~~~~~~Ea~~ia~~I~~l~~~~~~ 346 (494)
T pfam00580 275 VITLEQNYRSTPE-ILNAANKLISNNTARKEKRLLWSQKGSGEKVTV-------YEAETEQEEAEFIADEIKALHKSGAA 346 (494)
T ss_pred EEECCCCCCCCHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE-------EECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7258899898878-999999999726022445435455788996079-------83799999999999999999877999
Q ss_pred -CCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf -5771899819989999999999999
Q gi|254780229|r 1511 -PEESLGVIAMNAKQRDLIESTINKL 1535 (1775)
Q Consensus 1511 -~~~siGVvt~~~~Q~~~I~~~l~~~ 1535 (1775)
T Consensus 347 ~~~~DiAIL~R~~~~~~~l~~~L~~~ 372 (494)
T pfam00580 347 IPFGDIAVLVRSNSQSRAIEEALLKA 372 (494)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 88565689982523189999999977