HHsearch alignment for GI: 254780229 and conserved domain: pfam01443

>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.

Probab=95.71  E-value=0.015  Score=41.61  Aligned_cols=40  Identities=30%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             CCCEEEECCHHHCCH--HHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf             410788606323698--9988988611828996077866862
Q gi|254780229|r 1361 KFDLVIMDESSQIKP--EDALGVIARGKQIVVVGDPKQLPPT 1400 (1775)
Q Consensus      1361 ~FD~VI~DEASQ~~~--~~al~al~rakqvvvvGD~kQlpPt 1400 (1775)
T Consensus        59 ~~~~~iiDE~~~~~~g~l~~~~~~~~~~~~~l~GDp~Q~~~~  100 (226)
T pfam01443        59 TGKILILDEYTLLPPGYILLLAAISGAKLVILFGDPLQIPYH  100 (226)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             778899896456681689998760688679998287616477