HHsearch alignment for GI: 254780229 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=95.35 E-value=0.014 Score=41.78 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEC
Q ss_conf 200114777656246899999832142698870
Q gi|254780229|r 1587 VFQRFGPINSDIGWRRLNVLFTRSRRRIEVFST 1619 (1775)
Q Consensus 1587 ~~~~fGpln~~gg~rRlNVa~sRAr~~~~v~~s 1619 (1775)
T Consensus 241 VLHNmNPR~d~~G----NI~~LKIQaK~HIiSp 269 (370)
T pfam02456 241 VLHNMNPRTDIGG----NIATLKIQAKLHILSP 269 (370)
T ss_pred EEECCCCCCCCCC----CCCCHHHHHEEEEECC
T ss_conf 9605786666679----8341102011345168