HHsearch alignment for GI: 254780229 and conserved domain: pfam02534
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=94.17 E-value=0.19 Score=30.04 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=46.7
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 9559942878770389999999999679828996010589999998644358441365402661
Q gi|254780229|r 420 KNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELHSHK 483 (1775)
Q Consensus 420 ~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleLHs~k 483 (1775)
T Consensus 45 ~H~lviaptgsGKt~~~--ViPnLl~~~~S~VV~DpKGEl~~~Ta~~r~~~G~~V~v~np~~~~ 106 (468)
T pfam02534 45 SHVLVFAGTGSGKGVGV--VIPNLLVWKGSIVVLDPKGELWELTSGIREKQGRKVFVLEPFNPK 106 (468)
T ss_pred CEEEEECCCCCCCCCCC--HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 67999848999723424--298885189978999484889999999999779969999797999