HHsearch alignment for GI: 254780229 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.76  E-value=0.0011  Score=53.52  Aligned_cols=24  Identities=50%  Similarity=0.888  Sum_probs=21.3

Q ss_pred             CEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             5599428787703899999999996
Q gi|254780229|r  421 NLIIEGPPGTGKSQTITNIIAAAML  445 (1775)
Q Consensus       421 ~~vi~GPPGTGKSQTIaNlIa~~la  445 (1775)
T Consensus        52 h~lf~GPPG~GKT-TlAriiAk~~~   75 (234)
T pfam05496        52 HVLLYGPPGLGKT-TLANIIANEMG   75 (234)
T ss_pred             EEEEECCCCCCHH-HHHHHHHHHHC
T ss_conf             2788789999888-99999998408