HHsearch alignment for GI: 254780229 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.76 E-value=0.0011 Score=53.52 Aligned_cols=24 Identities=50% Similarity=0.888 Sum_probs=21.3
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 5599428787703899999999996
Q gi|254780229|r 421 NLIIEGPPGTGKSQTITNIIAAAML 445 (1775)
Q Consensus 421 ~~vi~GPPGTGKSQTIaNlIa~~la 445 (1775)
T Consensus 52 h~lf~GPPG~GKT-TlAriiAk~~~ 75 (234)
T pfam05496 52 HVLLYGPPGLGKT-TLANIIANEMG 75 (234)
T ss_pred EEEEECCCCCCHH-HHHHHHHHHHC
T ss_conf 2788789999888-99999998408