HHsearch alignment for GI: 254780229 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=96.74 E-value=0.0028 Score=49.08 Aligned_cols=58 Identities=34% Similarity=0.695 Sum_probs=41.2
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH-HHHH
Q ss_conf 489559942878770389999999999679828996010589999998644358441365402661108999999-9999
Q gi|254780229|r 418 NGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELHSHKVHKRAILDD-LRKR 496 (1775)
Q Consensus 418 ~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleLHs~ka~k~~vl~~-L~~~ 496 (1775)
T Consensus 49 aGraiLlaGppGTGKT-AlA~aiakeL--G~~vPF~~--i~g-----------------SEvyS~E~kKTE~L~qafRrs 106 (395)
T pfam06068 49 AGRAVLIAGPPGTGKT-ALAIAISKEL--GEDTPFCP--ISG-----------------SEVYSLEMKKTEALTQAFRKA 106 (395)
T ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHH--CCCCCEEE--EEH-----------------HEEECCCCCHHHHHHHHHHHH
T ss_conf 7738998779998889-9999999974--87997345--001-----------------112125654889999999887
Q ss_pred H
Q ss_conf 8
Q gi|254780229|r 497 I 497 (1775)
Q Consensus 497 l 497 (1775)
T Consensus 107 I 107 (395)
T pfam06068 107 I 107 (395)
T ss_pred H
T ss_conf 5