RPSBLAST alignment for GI: 254780229 and conserved domain: KOG1802
>gnl|CDD|37013 KOG1802, KOG1802, KOG1802, RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]. Length = 935
Score = 50.4 bits (120), Expect = 4e-06
Identities = 89/399 (22%), Positives = 142/399 (35%), Gaps = 75/399 (18%)
Query: 1250 LTEKPHLMHYSAVQFTAKQERFREYDKRLQFLQRQ-RIASVIGNQKIAQGISGGLKSDYT 1308
L EK H V+ AK E D L Q R QK+ + LK +
Sbjct: 470 LAEKIHKTGLKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLK-----LKDEGG 524
Query: 1309 ELSLIRSELGKKNRNIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMD 1368
ELS + R+L A+ LL + + + KF V++D
Sbjct: 525 ELS--------SSDEKKYRKLKRAAEKELLNQADVICCTCVGAGD-RRLSKFKFRTVLID 575
Query: 1369 ESSQIKPEDALGVIARG-KQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILD 1427
E++Q + L + G KQ+V+VGD KQL P ++ A ++S+ +
Sbjct: 576 EATQATEPECLIPLVLGAKQLVLVGDHKQLGPVIM----------CKKAATAGLSQSLFE 625
Query: 1428 ALLPLF-SMRRLQWHYRSLNENLIACSNYYFYDNSL-------------IVFPSPYTSVD 1473
L+ L RLQ YR ++ L + FY+ L + FP P
Sbjct: 626 RLISLGIKPIRLQVQYR-MHPALSEFPSNMFYEGELQNGVTEIERSPLGVDFPWPQPDKP 684
Query: 1474 RYGVGFTHVKNGVVVDQG-----NPEEA----RVIALAVKDHALRYPEESLGVIAMNAKQ 1524
+ F + N EA ++I +K +GVI Q
Sbjct: 685 ---LFFYVCYGQEEISASGTSFLNRTEAANCEKIITKLLKSGV---KPSQIGVITPYEGQ 738
Query: 1525 RDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKNLENVQGDERDRIFISFTYGPHEPG 1584
R I +N + S + ++ + +++ QG E+D I +S
Sbjct: 739 RSYI---VNYMQTNGSLHKDLYKEVE-------VASVDAFQGREKDFIILSCVR------ 782
Query: 1585 GRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTMRYL 1623
Q G +N RRLNV TR++ + + + L
Sbjct: 783 SNEHQGIGFLNDP---RRLNVALTRAKYGLVIVGNPKVL 818