Query gi|254780230|ref|YP_003064643.1| hypothetical protein CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs 103 out of 553
Neff 5.6
Searched_HMMs 33803
Date Tue May 24 00:09:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780230.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1taf_A TFIID TBP associated f 16.8 70 0.0021 13.3 5.2 44 21-64 4-47 (68)
2 >1aym_4 HRV16, human rhinoviru 9.5 76 0.0022 13.1 0.0 18 49-66 50-67 (68)
3 >2yui_A Anamorsin; cytokine-in 9.0 1.1E+02 0.0032 12.2 0.7 17 65-81 21-37 (182)
4 >1c8m_4 HRV16, human rhinoviru 8.3 90 0.0027 12.7 0.0 19 49-67 50-68 (77)
5 >1izn_A CAPZ alpha-1 subunit; 7.2 1.5E+02 0.0045 11.5 2.1 31 38-68 175-205 (224)
6 >2qen_A Walker-type ATPase; un 6.2 56 0.0017 13.8 -1.9 12 49-60 56-67 (69)
7 >3kfw_X Uncharacterized protei 6.2 1.7E+02 0.0051 11.2 1.3 40 16-57 4-43 (88)
8 >1uc8_A LYSX, lysine biosynthe 5.5 1.4E+02 0.0042 11.6 -0.2 27 49-75 62-88 (109)
9 >2d2s_A Exocyst complex compon 5.4 1.9E+02 0.0057 10.9 0.6 10 70-79 109-118 (130)
10 >1gsa_A Glutathione synthetase 4.6 1.2E+02 0.0034 12.1 -1.1 25 51-75 44-68 (113)
No 1
>>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} (A:)
Probab=16.81 E-value=70 Score=13.26 Aligned_cols=44 Identities=9% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999986358878765489999999999997789999998627
Q gi|254780230|r 21 TRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIPIRRFTP 64 (96)
Q Consensus 21 ~rvIlsW~~~f~~~n~~n~~v~~i~~~l~~lTeP~L~piRr~iP 64 (96)
+|++.+-+-..++..--.+.+++..+|.|+.|--+|.--+-+--
T Consensus 4 a~~i~~iL~~~GV~~yeprV~~qlLeF~yRYtt~vL~DA~~ys~ 47 (68)
T 1taf_A 4 AQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYAN 47 (68)
T ss_dssp HHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999986986036899999999999999999999999986
No 2
>>1aym_4 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} (4:)
Probab=9.48 E-value=76 Score=13.07 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999778999999862765
Q gi|254780230|r 49 YSFTEPFLIPIRRFTPSL 66 (96)
Q Consensus 49 ~~lTeP~L~piRr~iPpl 66 (96)
.+.|||+..-+.+-.|++
T Consensus 50 sKFT~Pv~Dv~~~~~PaL 67 (68)
T 1aym_4 50 SKFTDPVKDVLEKGIPTL 67 (68)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 553245899997237666
No 3
>>2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=8.99 E-value=1.1e+02 Score=12.22 Aligned_cols=17 Identities=0% Similarity=-0.213 Sum_probs=10.8
Q ss_pred CCCCCCCCCHHHHHHHH
Q ss_conf 65775532017999999
Q gi|254780230|r 65 SLGVEWKRIDLSPIILL 81 (96)
Q Consensus 65 plg~g~~giDlSpiv~~ 81 (96)
.+|-|+.|+|+|+-.+=
T Consensus 21 DiGcG~Gg~D~s~~~l~ 37 (182)
T 2yui_A 21 VVWDKSSPVEALKGLVD 37 (182)
T ss_dssp EEECTTSCSHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHH
T ss_conf 89743998045878999
No 4
>>1c8m_4 HRV16, human rhinovirus 16 coat protein; antiviral compound, drug, WIN compound, icosahedral virus; HET: W11; 2.80A {Human rhinovirus 16} (4:)
Probab=8.33 E-value=90 Score=12.67 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q ss_conf 9997789999998627657
Q gi|254780230|r 49 YSFTEPFLIPIRRFTPSLG 67 (96)
Q Consensus 49 ~~lTeP~L~piRr~iPplg 67 (96)
.+.|||+...+.+-.|++-
T Consensus 50 sKFT~Pv~Dv~~~~~p~L~ 68 (77)
T 1c8m_4 50 SKFTDPVKDVLEKGIPTLQ 68 (77)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 6761679999862576668
No 5
>>1izn_A CAPZ alpha-1 subunit; heterodimer, capping protein, actin filament barbed END capping, protein binding; 2.10A {Gallus gallus} (A:63-286)
Probab=7.16 E-value=1.5e+02 Score=11.46 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4899999999999977899999986276577
Q gi|254780230|r 38 NFFVQTARQLLYSFTEPFLIPIRRFTPSLGV 68 (96)
Q Consensus 38 n~~v~~i~~~l~~lTeP~L~piRr~iPplg~ 68 (96)
|.+-..+-+....+-|--+|-.||.+|=.|.
T Consensus 175 ~~~q~~l~~~~~~lse~~FK~LRR~LPVTR~ 205 (224)
T 1izn_A 175 NEYQTAISENYQTMSDTTFKALRRQLPVTRT 205 (224)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHSCSSCTTSS
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC
T ss_conf 9999999999987398789987710886776
No 6
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:282-350)
Probab=6.22 E-value=56 Score=13.77 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999778999999
Q gi|254780230|r 49 YSFTEPFLIPIR 60 (96)
Q Consensus 49 ~~lTeP~L~piR 60 (96)
|+++||+++..=
T Consensus 56 Y~i~DPv~~~a~ 67 (69)
T 2qen_A 56 YKIADPVVATVL 67 (69)
T ss_dssp EEESSHHHHHHH
T ss_pred EEECCHHHHHHH
T ss_conf 999178999986
No 7
>>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Mycobacterium tuberculosis} (X:160-247)
Probab=6.22 E-value=1.7e+02 Score=11.19 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998635887876548999999999999778999
Q gi|254780230|r 16 ANIVITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLI 57 (96)
Q Consensus 16 ~~~li~rvIlsW~~~f~~~n~~n~~v~~i~~~l~~lTeP~L~ 57 (96)
-|+--++..++++-+ -...|.+||..+.-+=.-+|||+|-
T Consensus 4 ~WA~~g~~LL~~~~~--a~d~p~RFv~aAA~VRHLltDPvLP 43 (88)
T 3kfw_X 4 GWTEAGHRLLGDXAA--ATDXPGRFVVAAAXVRHLLTDPXLP 43 (88)
T ss_dssp HHHHHHHHHHHHHHH--CCSHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999998863270--7678899999999999997189998
No 8
>>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} (A:79-102,A:175-259)
Probab=5.51 E-value=1.4e+02 Score=11.64 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 999778999999862765775532017
Q gi|254780230|r 49 YSFTEPFLIPIRRFTPSLGVEWKRIDL 75 (96)
Q Consensus 49 ~~lTeP~L~piRr~iPplg~g~~giDl 75 (96)
..++|-..+-.+|....+|.+..|+|+
T Consensus 62 ~~l~~ei~~la~kv~~~lgl~~~gIDl 88 (109)
T 1uc8_A 62 CPLTEEVARLSVKAAEAVGGGVVAVDL 88 (109)
T ss_dssp CCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 211112389999999983998799999
No 9
>>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} (A:106-235)
Probab=5.45 E-value=1.9e+02 Score=10.93 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred CCCCHHHHHH
Q ss_conf 5320179999
Q gi|254780230|r 70 WKRIDLSPII 79 (96)
Q Consensus 70 ~~giDlSpiv 79 (96)
.+|+|++|++
T Consensus 109 ~vGLdl~~~l 118 (130)
T 2d2s_A 109 AVGLDFVYKL 118 (130)
T ss_dssp GGTCCCHHHH
T ss_pred HCCCCHHHHH
T ss_conf 5390749879
No 10
>>1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} (A:204-316)
Probab=4.61 E-value=1.2e+02 Score=12.08 Aligned_cols=25 Identities=20% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 9778999999862765775532017
Q gi|254780230|r 51 FTEPFLIPIRRFTPSLGVEWKRIDL 75 (96)
Q Consensus 51 lTeP~L~piRr~iPplg~g~~giDl 75 (96)
+||...+..++....+|+...|+|+
T Consensus 44 l~~~~~~~a~~~~~~l~l~~~giD~ 68 (113)
T 1gsa_A 44 LTESDWKIARQIGPTLKEKGLIFVG 68 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 5578999999999999986998999
Done!