Query gi|254780230|ref|YP_003064643.1| hypothetical protein CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs 103 out of 553
Neff 5.6
Searched_HMMs 13730
Date Mon May 23 21:38:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780230.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tafa_ a.22.1.3 (A:) TAF(II)4 21.5 22 0.0016 13.8 5.2 44 21-64 4-47 (68)
2 d2di0a1 a.5.2.4 (A:8-70) Activ 3.0 1.3E+02 0.0098 9.7 1.2 18 52-69 6-23 (63)
3 d2d2sa1 a.118.17.2 (A:525-753) 2.9 1.4E+02 0.01 9.6 0.6 62 17-80 141-218 (229)
4 d1izna_ e.43.1.1 (A:) Capz alp 2.9 1.4E+02 0.01 9.6 2.4 31 38-68 231-261 (275)
5 d1mn8a_ a.61.1.6 (A:) MMLV mat 2.2 1.9E+02 0.014 8.8 0.5 16 25-41 39-54 (95)
6 d1y6ia1 a.118.1.22 (A:1-82) Mg 2.1 2E+02 0.015 8.7 2.6 43 22-64 36-79 (82)
7 d2gv8a2 c.3.1.5 (A:181-287) Fl 2.0 2.1E+02 0.015 8.6 0.2 14 66-79 38-51 (107)
8 d1af7a1 a.58.1.1 (A:11-91) Che 2.0 1E+02 0.0073 10.3 -1.7 13 52-64 13-25 (81)
9 d1i5ea_ c.61.1.1 (A:) Uracil P 2.0 2.2E+02 0.016 8.5 1.0 21 53-73 81-101 (208)
10 d1uhua_ a.61.1.6 (A:) Product 1.8 2.4E+02 0.017 8.4 0.4 12 27-39 44-55 (105)
No 1
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.46 E-value=22 Score=13.84 Aligned_cols=44 Identities=9% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999986358878765489999999999997789999998627
Q gi|254780230|r 21 TRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIPIRRFTP 64 (96)
Q Consensus 21 ~rvIlsW~~~f~~~n~~n~~v~~i~~~l~~lTeP~L~piRr~iP 64 (96)
++++.+-+-..++..-..+.+++..|+.|+.|--+|.--+-+--
T Consensus 4 a~~i~~iL~~~GV~~yeprV~~qlLef~yRYtt~VL~DA~vys~ 47 (68)
T d1tafa_ 4 AQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYAN 47 (68)
T ss_dssp HHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999986986046899999999999999999999999986
No 2
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.96 E-value=1.3e+02 Score=9.67 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 778999999862765775
Q gi|254780230|r 52 TEPFLIPIRRFTPSLGVE 69 (96)
Q Consensus 52 TeP~L~piRr~iPplg~g 69 (96)
.|....-+|-+.|.+|.|
T Consensus 6 l~s~I~qV~Dl~PdLG~G 23 (63)
T d2di0a1 6 LDSLISQVKDLLPDLGEG 23 (63)
T ss_dssp HHHHHHHHHHHCCSSCHH
T ss_pred HHHHHHHHHHHCCCCCHH
T ss_conf 999999999985877579
No 3
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.91 E-value=1.4e+02 Score=9.63 Aligned_cols=62 Identities=10% Similarity=-0.038 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------CCCCCCCHHHHHHH
Q ss_conf 99999999998635887876548999999999999778999999862765----------------77553201799999
Q gi|254780230|r 17 NIVITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIPIRRFTPSL----------------GVEWKRIDLSPIIL 80 (96)
Q Consensus 17 ~~li~rvIlsW~~~f~~~n~~n~~v~~i~~~l~~lTeP~L~piRr~iPpl----------------g~g~~giDlSpiv~ 80 (96)
...+..++......|.-. .+..-.........=+|-..+-++|-+|.- -++.+|+|++++..
T Consensus 141 f~~i~~t~~~y~aiF~~~--~~~~sS~lv~Wa~~ei~~f~~~l~r~l~~~~~~~~~~i~~~~~~c~~L~~vGlDf~~lL~ 218 (229)
T d2d2sa1 141 FQTIKKTVEDFQDIFKEL--GAKISSILVDWCSDEVDNHFKLIDKQLLNDEMLSPGSIKSSRKQIDGLKAVGLDFVYKLD 218 (229)
T ss_dssp HHHHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHGGGGGTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999999992899--904565999999999999999999985642268999999999999999873904798899
No 4
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.87 E-value=1.4e+02 Score=9.59 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4899999999999977899999986276577
Q gi|254780230|r 38 NFFVQTARQLLYSFTEPFLIPIRRFTPSLGV 68 (96)
Q Consensus 38 n~~v~~i~~~l~~lTeP~L~piRr~iPplg~ 68 (96)
|.+-..+-+....+-|--+|-.||.+|=.|.
T Consensus 231 ~~~q~~l~e~f~~ls~~~FK~LRR~LPVTR~ 261 (275)
T d1izna_ 231 NEYQTAISENYQTMSDTTFKALRRQLPVTRT 261 (275)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHSCSSCTTSS
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC
T ss_conf 9999999999998588799987720886776
No 5
>d1mn8a_ a.61.1.6 (A:) MMLV matrix protein {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=2.18 E-value=1.9e+02 Score=8.83 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=11.3
Q ss_pred HHHHHCCCCCCCCCHHH
Q ss_conf 99863588787654899
Q gi|254780230|r 25 FSFLYTYDIINPLNFFV 41 (96)
Q Consensus 25 lsW~~~f~~~n~~n~~v 41 (96)
..| +.|+..|+++|-.
T Consensus 39 seW-Ptf~vgWP~eGTf 54 (95)
T d1mn8a_ 39 AEW-PTFNVGWPRDGTF 54 (95)
T ss_dssp TTG-GGGCSSCCTTCCC
T ss_pred CCC-CCCCCCCCCCCEE
T ss_conf 327-7678899999804
No 6
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=2.11 E-value=2e+02 Score=8.73 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHCC
Q ss_conf 999998635887876548999999999999778999-9998627
Q gi|254780230|r 22 RIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLI-PIRRFTP 64 (96)
Q Consensus 22 rvIlsW~~~f~~~n~~n~~v~~i~~~l~~lTeP~L~-piRr~iP 64 (96)
.+.++.+..=...++++-....+.+.+|+.-+|--+ ++.+.-|
T Consensus 36 ~vL~eFL~~~~~~~~~t~V~GkaYq~L~~~~~~~~~eFLq~~FP 79 (82)
T d1y6ia1 36 GILLDYLAKNVPLEKPVLAVGNVYQTLRNLEQETITTQLQRNYP 79 (82)
T ss_dssp HHHHHHHHHHCSCSSCCHHHHHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 99999999808668998101039999881685899999998787
No 7
>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=2.02 E-value=2.1e+02 Score=8.61 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=8.3
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 57755320179999
Q gi|254780230|r 66 LGVEWKRIDLSPII 79 (96)
Q Consensus 66 lg~g~~giDlSpiv 79 (96)
+|.|..|.|+++-+
T Consensus 38 VG~g~Sa~dia~~l 51 (107)
T d2gv8a2 38 VGGASSANDLVRHL 51 (107)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHH
T ss_conf 88898799999999
No 8
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.00 E-value=1e+02 Score=10.34 Aligned_cols=13 Identities=8% Similarity=0.122 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 7789999998627
Q gi|254780230|r 52 TEPFLIPIRRFTP 64 (96)
Q Consensus 52 TeP~L~piRr~iP 64 (96)
||+-++.+++++-
T Consensus 13 sd~~f~~~~~~i~ 25 (81)
T d1af7a1 13 SDAHFRRICQLIY 25 (81)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999999
No 9
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=1.95 E-value=2.2e+02 Score=8.53 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 789999998627657755320
Q gi|254780230|r 53 EPFLIPIRRFTPSLGVEWKRI 73 (96)
Q Consensus 53 eP~L~piRr~iPplg~g~~gi 73 (96)
.|.+..+|+++|....|-+|+
T Consensus 81 l~m~~g~~~~~p~a~vg~Ig~ 101 (208)
T d1i5ea_ 81 IGMVDGILKLIPAAKVGHIGL 101 (208)
T ss_dssp GGGHHHHHHHCTTSEECEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEE
T ss_conf 668998997587762436888
No 10
>d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22 {Unclassified, murine endogenous retrovirus [TaxId: 12908]}
Probab=1.83 E-value=2.4e+02 Score=8.35 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCCH
Q ss_conf 8635887876548
Q gi|254780230|r 27 FLYTYDIINPLNF 39 (96)
Q Consensus 27 W~~~f~~~n~~n~ 39 (96)
| ++|+..|+++|
T Consensus 44 W-Ptf~vgWP~eG 55 (105)
T d1uhua_ 44 W-PTFDVGWPPEG 55 (105)
T ss_dssp S-TTSSSSCCSSC
T ss_pred C-CCCCCCCCCCC
T ss_conf 7-65788999998
Done!