RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780230|ref|YP_003064643.1| hypothetical protein
CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>gnl|CDD|145464 pfam02325, YGGT, YGGT family.  This family consists of a repeat
          found in conserved hypothetical integral membrane
          proteins. The function of this region and the proteins
          which possess it is unknown.
          Length = 75

 Score = 33.6 bits (78), Expect = 0.013
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 8  LLLLLELYANIVITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIPIRRFTPSLG 67
          L  LL +Y  ++I R++ S++   D  NP+        Q LY  TEP L P RR  P +G
Sbjct: 1  LSTLLNIYIFLLIIRVILSWVPA-DPYNPI-------VQFLYRLTEPLLRPFRRVIPPIG 52

Query: 68 VEWKRIDLSPIILLTVIYILQCFLKFL 94
               IDLSPI+   ++  LQ  L  L
Sbjct: 53 ----GIDLSPIVAFLLLQFLQILLLGL 75


>gnl|CDD|37269 KOG2058, KOG2058, KOG2058, Ypt/Rab GTPase activating protein
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 436

 Score = 26.6 bits (58), Expect = 1.7
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 1   MNFLFKILLLLL--ELYANIVITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIP 58
           MNFL  +LLLL+  E  A  ++  ++ ++L  Y   N +    Q  +++L       L  
Sbjct: 246 MNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIG--SQVDQKVLRELLREKLPK 303

Query: 59  IRRFTPSLGVEWKRIDLSPIILL--------TVIYILQCFLK 92
           +       GV+     L   + L        TV+ I  C   
Sbjct: 304 LSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFY 345


>gnl|CDD|114268 pfam05537, DUF759, Borrelia burgdorferi protein of unknown function
           (DUF759).  This family consists of several
           uncharacterized proteins from the Lyme disease
           spirochete Borrelia burgdorferi.
          Length = 439

 Score = 26.2 bits (57), Expect = 2.0
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7   ILLLLLELYANIV--ITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTE 53
           +L  L+ +  N +  +   + +F +  DIINP+   +++A   LY F +
Sbjct: 359 VLDPLINIINNGIAKVKDFIGNFDFLKDIINPIGNGIKSAFNGLYFFAK 407


>gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels
           (LTRPC family) [Inorganic ion transport and metabolism,
           Signal transduction mechanisms].
          Length = 1381

 Score = 25.3 bits (55), Expect = 3.8
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 19/88 (21%)

Query: 19  VITRIVFSFLYTYDIINPL----------------NFFVQTARQLLYSFTEPFLIPIRRF 62
           V++ I F  L+TY ++                     F++  RQ+  S +      +R +
Sbjct: 799 VLSYIAFLLLFTYVLLVDFQPSPSMWEWILFAWIFTLFLEEVRQIFISESGLLPQKVRVY 858

Query: 63  TPSLGVEWKRIDLSPIILLTVIYILQCF 90
                  W  IDL  I+L  V  +L+  
Sbjct: 859 ---FADFWNLIDLLAILLFLVGPVLRLL 883


>gnl|CDD|39826 KOG4626, KOG4626, KOG4626, O-linked N-acetylglucosamine transferase
           OGT [Carbohydrate transport and metabolism,
           Posttranslational modification, protein turnover,
           chaperones, Signal transduction mechanisms].
          Length = 966

 Score = 24.6 bits (53), Expect = 6.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 59  IRRFTPSLGVEWKRIDLSPIIL 80
            R +   LG+E  RI  SP+  
Sbjct: 804 FRTYAEQLGLEPDRIIFSPVAA 825


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.340    0.155    0.469 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,284,827
Number of extensions: 67132
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 32
Length of query: 96
Length of database: 6,263,737
Length adjustment: 64
Effective length of query: 32
Effective length of database: 4,880,761
Effective search space: 156184352
Effective search space used: 156184352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (23.9 bits)