RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780230|ref|YP_003064643.1| hypothetical protein
CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>gnl|CDD|173168 PRK14705, PRK14705, glycogen branching enzyme; Provisional.
          Length = 1224

 Score = 27.7 bits (61), Expect = 0.74
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 47   LLYSFTEPFLIPI 59
            L+Y+FTE FL+PI
Sbjct: 1010 LVYAFTENFLLPI 1022


>gnl|CDD|178149 PLN02534, PLN02534, UDP-glycosyltransferase.
          Length = 491

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 20  ITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIP 58
           I RIVF  +  + +++  N  +  A   + S +EPF++P
Sbjct: 141 IPRIVFHGMCCFSLLSSHNIRLHNAHLSVSSDSEPFVVP 179


>gnl|CDD|163563 TIGR03851, chitin_NgcE, carbohydrate ABC transporter,
           N-acetylglucosamine/diacetylchitobiose-binding protein. 
           Members of this protein family are the substrate-binding
           protein, a lipid-anchored protein of Gram-positive
           bacteria in all examples found so far, that include NgcE
           of the chitin-degrader, Streptomyces olivaceoviridis,
           and close homologs from other species likely to share
           the same function. NgcE binds both N-acetylglucosamine
           and the chitin dimer, N,N'-diacetylchitobiose.
          Length = 450

 Score = 26.2 bits (58), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 52  TEPFLIPIRRFTPSLGVEWKRIDLS 76
            EPF++P +   P+ G+E+ RI LS
Sbjct: 329 GEPFIVPAKAKNPAGGLEYLRIMLS 353


>gnl|CDD|165031 PHA02651, PHA02651, IL-1 receptor antagonist; Provisional.
          Length = 165

 Score = 24.6 bits (53), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 6  KILLLLLELYANIVITRIVFSFLYTYDIINPLNFFVQ 42
          K L+LLL LY NI  ++    F+Y    +N   F+++
Sbjct: 2  KKLILLLVLYINIFNSKAAGMFMYNIWDVNQKIFYLR 38


>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1.  This model
           represents the full length, over a thousand amino acids,
           of a multicopy family of eukaryotic proteins, many of
           which are designated ubiquitin-activating enzyme E1.
           Members have two copies of the ThiF family domain
           (pfam00899), a repeat found in ubiquitin-activating
           proteins (pfam02134), and other regions.
          Length = 1008

 Score = 24.1 bits (52), Expect = 8.5
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 31  YDIINPLNFFVQTARQLLYSFTEPFLIPIRRFTPS 65
           +D+  PL+     A   LY+    + IP      S
Sbjct: 706 FDLNEPLHLSFIQAAAKLYATV--YGIPFAEEDLS 738


>gnl|CDD|178286 PLN02682, PLN02682, pectinesterase family protein.
          Length = 369

 Score = 24.0 bits (52), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 21  TRIVFSFLYTYDIINP 36
           +R+VF++ Y  +II P
Sbjct: 293 SRVVFAYTYMDNIIIP 308


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.340    0.155    0.469 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,645,384
Number of extensions: 98240
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 26
Length of query: 96
Length of database: 5,994,473
Length adjustment: 64
Effective length of query: 32
Effective length of database: 4,611,561
Effective search space: 147569952
Effective search space used: 147569952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.1 bits)