RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780230|ref|YP_003064643.1| hypothetical protein
CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 29.0 bits (64), Expect = 0.22
 Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 52  TEPFLIPIRRFTPSLGVEWKRIDLSPIILLTVIYILQCFLKF 93
           T  F + +     +   + + I L+P   L    I+    + 
Sbjct: 172 TAAFALTMLSRVDASVPKPQAICLAPSREL-ARQIMDVVTEM 212


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.340    0.155    0.469 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 734,957
Number of extensions: 29111
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 4,956,049
Length adjustment: 56
Effective length of query: 40
Effective length of database: 3,062,969
Effective search space: 122518760
Effective search space used: 122518760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.6 bits)