RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780231|ref|YP_003064644.1| hypothetical protein
CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>gnl|CDD|111487 pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872. 
          Length = 78

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 6  VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
          VR+ PNAKK+ I  +E      +   +K+++TA P  GKAN  ++  LAK L + KS + 
Sbjct: 9  VRVKPNAKKNSIVGVE------EWGELKVRITAPPVDGKANAELIKFLAKTLGVPKSDVE 62

Query: 66 MLSKQSSPLKIIYID 80
          ++S ++S  K++ I+
Sbjct: 63 IVSGETSRSKVLLIE 77


>gnl|CDD|32056 COG1872, COG1872, Uncharacterized conserved protein [Function
          unknown].
          Length = 102

 Score = 54.2 bits (130), Expect = 7e-09
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 6  VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
          VR+ P AK+  I  L+          +K+++TA P  GKAN+ ++  LAK   + KSS+ 
Sbjct: 17 VRVKPKAKRDSIVGLDE-----WRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVE 71

Query: 66 MLSKQSSPLKIIYIDKDCKEI 86
          ++S ++S LK + I     + 
Sbjct: 72 IVSGETSRLKTVLIKNIDPDQ 92


>gnl|CDD|38486 KOG3276, KOG3276, KOG3276, Uncharacterized conserved protein,
           contains YggU domain [Function unknown].
          Length = 125

 Score = 27.7 bits (61), Expect = 0.75
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 10  PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSK 69
           P AK+S I  +           + + + A P++G+AN  +L  L+K L L KS + +   
Sbjct: 43  PGAKQSAITDVGDEA-------VGVAIAAPPREGEANAELLEYLSKVLGLRKSDVTLDKG 95

Query: 70  QSSPLKIIYIDK 81
             S  K++ I+ 
Sbjct: 96  WKSRSKVVVIED 107


>gnl|CDD|36169 KOG0951, KOG0951, KOG0951, RNA helicase BRR2, DEAD-box superfamily
           [RNA processing and modification].
          Length = 1674

 Score = 25.7 bits (56), Expect = 3.2
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 25  DTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYI 79
           D +      + + A    GK N A+L +L +   L        S   +P KI+YI
Sbjct: 319 DAALRGDENMLLCAPTGAGKTNVAVLTILQE---LGNHLREDGSVNLAPFKIVYI 370


>gnl|CDD|33740 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
           transport and metabolism].
          Length = 243

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 42  KGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74
           KG A  A+ A LA+K    +  L    +  S L
Sbjct: 70  KGHAAPALYATLAEKGYFPEEELETFRRIGSRL 102


>gnl|CDD|31516 COG1325, COG1325, Predicted exosome subunit [Translation, ribosomal
           structure and biogenesis].
          Length = 149

 Score = 24.5 bits (53), Expect = 6.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 25  DTSDTIHMKIKVTATPQKGKANKAMLAMLAK 55
           +  D I +KIKV A P K +A    +  L +
Sbjct: 118 EGDDVIRLKIKVEAYPAKREAVVENVRELLE 148


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 949,692
Number of extensions: 36519
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 11
Length of query: 98
Length of database: 6,263,737
Length adjustment: 66
Effective length of query: 32
Effective length of database: 4,837,543
Effective search space: 154801376
Effective search space used: 154801376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)