RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780231|ref|YP_003064644.1| hypothetical protein
CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU
          {Escherichia coli, o157 [TaxId: 562]}
          Length = 100

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 6  VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
          + + P A +  I  L           +K+ +TA P  G+AN  ++  L K+  ++KS + 
Sbjct: 19 LYIQPKASRDSIVGLH-------GDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVV 71

Query: 66 MLSKQSSPLKIIYIDKDCK---EITELL 90
          +   +    K I I    +   E+  L+
Sbjct: 72 IEKGELGRHKQIKIINPQQIPPEVAALI 99


>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 104

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 6  VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
          + + P + K GI S    +       +++K+ + PQKGKAN+ ++   ++        + 
Sbjct: 18 IEVSPASGKFGIPSYNEWRK-----RIEVKIHSPPQKGKANREIIKEFSETF---GRDVE 69

Query: 66 MLSKQSSPLKIIYIDKDCKE-ITELLQ 91
          ++S Q S  K I I    ++   +L+ 
Sbjct: 70 IVSGQKSRQKTIRIQGMGRDLFLKLVS 96


>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 124

 Score = 23.3 bits (50), Expect = 5.2
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 1   MCNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKG 43
              VI+    N +       E  KD  +T   +  + + P  G
Sbjct: 82  GKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILSGPSSG 124


>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 460

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 59 LSKSSLRMLSKQSSPLKIIYI------DKDCKEITELLQNNDSLT 97
          LS +    L       +++ +      +  CK+I+  L+ N +L 
Sbjct: 14 LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58


>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 23.2 bits (49), Expect = 6.9
 Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 2/70 (2%)

Query: 15  SGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLS--KQSS 72
           S I   E    +   +   +           N       A   AL    L  ++  ++++
Sbjct: 110 SQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA 169

Query: 73  PLKIIYIDKD 82
             ++    K 
Sbjct: 170 LAEVNLKKKS 179


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,777
Number of extensions: 11136
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 10
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)