BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780231|ref|YP_003064644.1| hypothetical protein
CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780231|ref|YP_003064644.1| hypothetical protein CLIBASIA_00580 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 98

 Score =  193 bits (490), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MCNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALS 60
          MCNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALS
Sbjct: 1  MCNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALS 60

Query: 61 KSSLRMLSKQSSPLKIIYIDKDCKEITELLQNNDSLTL 98
          KSSLRMLSKQSSPLKIIYIDKDCKEITELLQNNDSLTL
Sbjct: 61 KSSLRMLSKQSSPLKIIYIDKDCKEITELLQNNDSLTL 98


>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 587

 Score = 25.8 bits (55), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 4  VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLA 54
          V+V  I N    GI    +P+D  D + + + V + PQ   A++  L ML+
Sbjct: 26 VLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQ--YASRTTLRMLS 74


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 23.9 bits (50), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1  MCNVIVRLIPNAKKSGIAS 19
           CN++ +L+ N++K  IAS
Sbjct: 41 FCNMLWKLLQNSRKESIAS 59


>gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score = 21.9 bits (45), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 60  SKSSLRMLSKQSSPLKIIYIDKDCKEITELLQNNDS 95
           +   L ML      LK I +D   ++IT+L  NN S
Sbjct: 161 AHRQLSMLYGHFPVLKTITMDITFEKITQLYPNNVS 196


>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 262

 Score = 21.2 bits (43), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 4   VIVRLIPNAKKSGIASLEIPK 24
           V   ++P  +K+G  S+E PK
Sbjct: 93  VFEEVLPTLRKTGSYSVEAPK 113


>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
          Length = 723

 Score = 20.0 bits (40), Expect = 9.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 55  KKLALSKSSLRMLSKQSSPLKIIYIDKDCKEITELL 90
           ++LAL+  +  ++ ++ + +K    D  CK+I+E++
Sbjct: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.127    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,513
Number of Sequences: 1233
Number of extensions: 1420
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 328,796
effective HSP length: 61
effective length of query: 37
effective length of database: 253,583
effective search space:  9382571
effective search space used:  9382571
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)