RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase
[Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>gnl|CDD|144352 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.
Length = 156
Score = 217 bits (556), Expect = 1e-57
Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 3/156 (1%)
Query: 18 NVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDDGDPVDVIMYS 77
NV IEI G +KYE+DK+SG+L VDR + T M YP NYGFIP TL DGDP+DV++
Sbjct: 1 NVVIEIPKGSR-VKYEIDKESGLLPVDRVLYTSMGYPFNYGFIPQTLEGDGDPLDVLVLG 59
Query: 78 SEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVE 137
EP+ PGSV+ RPIGV+ M D+G D+KI+AVP YD I+ ED+P L ++E
Sbjct: 60 PEPLFPGSVVRVRPIGVLAMIDEGETDDKIIAVPVD--DPRYDDIKDIEDLPPGLLDEIE 117
Query: 138 HFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
HFF+HYKDLE+GKW K++GW A K I EA++R
Sbjct: 118 HFFEHYKDLEEGKWVKVEGWGDAEEAKKEIKEAIER 153
>gnl|CDD|29533 cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes
hydrolyze inorganic pyrophosphate (PPi) to two molecules
of orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers..
Length = 155
Score = 196 bits (500), Expect = 3e-51
Identities = 79/157 (50%), Positives = 104/157 (66%), Gaps = 3/157 (1%)
Query: 16 DVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDDGDPVDVIM 75
VNV IEI G KYE+DK++G + VDRF+ + M YP NYGFIP TL DDGDP+DV++
Sbjct: 2 VVNVVIEIPKGS-NAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLV 60
Query: 76 YSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQK 135
EP+ PGSVI RP+GV+KM D+G D K++AVP + Y I DVP L +
Sbjct: 61 IGEEPLFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDP--RYSHINDISDVPPHLLDE 118
Query: 136 VEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVK 172
++HFF+HYKDLE K K+ GW+ A KII E+++
Sbjct: 119 IKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESIE 155
>gnl|CDD|30570 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and
conversion].
Length = 171
Score = 184 bits (468), Expect = 1e-47
Identities = 89/170 (52%), Positives = 119/170 (70%), Gaps = 4/170 (2%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
L++I G + D+NV IEI G IKYE+DK++G L+VDR + TPM YP NYGFIPNT
Sbjct: 3 LHKIPAGPD-DEDINVVIEIP-KGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNT 60
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
LSDDGDP+DV++ EP+ PG VI RPIGV+KM D+G D+K++AVP + Y+ I+
Sbjct: 61 LSDDGDPLDVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPR--YEHIK 118
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
D+P L +++HFF+ YKDLE GKW K++GWE A K I EA++R
Sbjct: 119 DISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAKKEIKEAIER 168
>gnl|CDD|36839 KOG1626, KOG1626, KOG1626, Inorganic pyrophosphatase/Nucleosome
remodeling factor, subunit NURF38 [Energy production and
conversion].
Length = 279
Score = 91.9 bits (228), Expect = 8e-20
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 5 NEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTL 64
+++++ P N +EIS + DKK G L R + Y NYG +P T
Sbjct: 42 HDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNLFPYKGYIWNYGALPQTW 101
Query: 65 SD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPS 112
D D DP+DV+ EP+LPG V+ + +G+M + D+G D KI+A+
Sbjct: 102 EDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDV 161
Query: 113 KN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGK 150
+ + S Y+ I+ E + L+ +F+ YK + DGK
Sbjct: 162 NDPLASEYNDIEDVEKLFPGLLEATRRWFRDYK-IPDGK 199
>gnl|CDD|37916 KOG2705, KOG2705, KOG2705, Predicted membrane protein [Function
unknown].
Length = 471
Score = 29.2 bits (65), Expect = 0.57
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 82 LPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD-----SIQSYEDVPNAYLQKV 136
+P +++ R IG++ DG + L+ P + +T++ D I ++ +L
Sbjct: 119 MPHCILTLRFIGLVMDVYDGAKKPEHLS-PDQKLTAISDKPSLLEIAAFSYFFQGFLVGP 177
Query: 137 EHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
+ Y+ +G+W DG K L ++ R
Sbjct: 178 QFTLSKYRSFVNGEWLDSDG-----QPPKSALPSIGR 209
>gnl|CDD|145652 pfam02614, UxaC, Glucuronate isomerase. This is a family of
Glucuronate isomerases also known as D-glucuronate
isomerase, uronic isomerase, uronate isomerase, or
uronic acid isomerase, EC:5.3.1.12. This enzyme
catalyses the reactions: D-glucuronate <=>
D-fructuronate and D-galacturonate <=> D-tagaturonate.
It is not however clear where the experimental evidence
for this functional assignment came from and thus this
family has no literature reference.
Length = 465
Score = 27.6 bits (62), Expect = 2.0
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 69 DPVDVIMY----SSEPILPGSVIST-RPIGVMKMEDDGGID--EKILAVPSKNITSLYDS 121
DP+D + Y + + V+ T RP +K+E++G D EK+ V
Sbjct: 154 DPIDDLEYHKALAEDESFSVKVLPTFRPDKALKIENEGFADYVEKLGEVSG-------ID 206
Query: 122 IQSYEDVPNAYLQKVEHFFKH 142
I S++D A ++++ F +H
Sbjct: 207 ITSFDDFLEALRKRIDFFHEH 227
>gnl|CDD|145845 pfam02901, PFL, Pyruvate formate lyase.
Length = 645
Score = 26.8 bits (60), Expect = 3.2
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 101 GGIDE---KILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHY 143
GG DE K + + +TS S+E+V A+ +++++ Y
Sbjct: 457 GGRDELTGKQVGPKTGPLTSF----LSFEEVMEAFKKQLDYLADLY 498
>gnl|CDD|38347 KOG3137, KOG3137, KOG3137, Peptide deformylase [Translation,
ribosomal structure and biogenesis].
Length = 267
Score = 26.2 bits (57), Expect = 4.8
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 21 IEISLGGYP---IKYEMDKKSGVLVVDRFIS 48
IS G+P ++E D GVL D+
Sbjct: 214 FSISASGWPARIFQHEYDHLEGVLFFDKMTD 244
>gnl|CDD|88567 cd05127, RasGAP_IQGAP_related, This family represents IQ motif
containing GTPase activating protein (IQGAP) which
associated with the Ras GTP-binding protein. A primary
function of IQGAP proteins is to modulate cytoskeletal
architecture. There are three known IQGAP family
members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and
IQGAP2 share 62% indentity. IQGAPs are multi-domain
molecules having a calponin-homology (CH) domain which
binds F-actin, IQGAP-specific repeats, a single WW
domain, four IQ motifs that mediate interactions with
calmodulin, and a RasGAP related domain that binds
active Rho family GTPases. IQGAP is an essential
regulator of cytoskeletal function. IQGAP1 negatively
regulates Ras family GTPases by stimulating their
intrinsic GTPase activity, the protein actually lacks
GAP activity. Both IQGAP1 and IQGAP2 specifically bind
to Cdc42 and Rac1, but not to RhoA. Despite of their
similarities to part of the sequence of RasGAP, neither
IQGAP1 nor IQGAP2 interacts with Ras. IQGAP3, only
present in mammals, regulates the organization of the
cytoskeleton under the regulation of Rac1 and Cdc42 in
neuronal cells. The depletion of IQGAP3 is shown to
impair neurite or axon outgrowth in neuronal cells with
disorganized cytoskeleton..
Length = 325
Score = 25.6 bits (56), Expect = 8.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 31 KYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDD 67
+ E+ K G + RFI+ ++ P N+G + + + D
Sbjct: 166 EDEILKVIGNFLYYRFINPAIVSPENFGIVDGSPTPD 202
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.315 0.138 0.403
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,203,904
Number of extensions: 115671
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 16
Length of query: 177
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 89
Effective length of database: 4,362,145
Effective search space: 388230905
Effective search space used: 388230905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.4 bits)