RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase
[Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A
{Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A
2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A
1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A* (A:)
Length = 175
Score = 200 bits (509), Expect = 1e-52
Identities = 82/174 (47%), Positives = 114/174 (65%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
L + G + P D+ V IEI PIKYE+DK+SG L VD+F+ST M YP NYG+I +T
Sbjct: 2 LLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHT 61
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
LS DGDPVDV++ + P+ PGSV RP+GV+KM D+ G D K++AVP ++ YD I+
Sbjct: 62 LSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIK 121
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
D+P ++ HFF+HYKDLE GKW K++GWE +A I+ + +R +
Sbjct: 122 DVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERAKNK 175
>3lo0_A Inorganic pyrophosphatase; ALS collaborative
crystallography, emerald biostructures, hydrolase,
structural genomics; 1.95A {Ehrlichia chaffeensis} (A:)
Length = 193
Score = 200 bits (509), Expect = 1e-52
Identities = 79/170 (46%), Positives = 114/170 (67%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
L+ ++ G N P ++NV IEIS P+KYE DK+ + VDRF+ T M YP NYGFIP+T
Sbjct: 24 LDNVTGGDNVPKEINVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFIPHT 83
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
+ DGDPVDV++ S P++ G+VI RP+GV+ M D+ G D KILAVP+ + Y++I+
Sbjct: 84 CAGDGDPVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYNNIK 143
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
Y D P ++L + HFF YK LE+ K+ ++GW+ V A K+IL A+ +
Sbjct: 144 DYSDFPVSFLNSISHFFTFYKKLEEDKFVSVEGWKDVTVAEKLILSALIK 193
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal inorganic
pyrophosphatase; ssgcid, inorganic phosphatase,
hydrolase; 1.90A {Brucella melitensis biovar
ABORTUS2308} (A:)
Length = 197
Score = 197 bits (503), Expect = 6e-52
Identities = 98/177 (55%), Positives = 135/177 (76%)
Query: 1 MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60
+ ++ IS+GSN P DVNV IE+ +GG PIKYEMDKK+G L+VDRF+ TPM YPGNYGF+
Sbjct: 21 SMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFV 80
Query: 61 PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120
P+TLS+DGDP+DV++ ++ P++PG VI+ RPIGV+ MED+ G DEKI+AVPS ++T Y+
Sbjct: 81 PHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYE 140
Query: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
I Y D+P L+++ HFF+HYKDLE GKW K+ W + A K I+EA++R +
Sbjct: 141 KIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIERAKGK 197
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase,
seattle structural genomics center for infectious
disease, ssgcid; HET: PGE; 1.75A {Burkholderia
pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A*
3eiz_A* (A:)
Length = 196
Score = 195 bits (498), Expect = 2e-51
Identities = 81/170 (47%), Positives = 115/170 (67%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
+ + G + P D NV IEI P+KYE DK G+LVVDRFI T M YP NYGFIP T
Sbjct: 24 FSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQT 83
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
LS DGDPVDV++ + P+L GSV+ R +G++KM D+ G+D K++AVP + + +++
Sbjct: 84 LSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLK 143
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
S +DVP +++HFF+ YK LE GKW K++GW+G+++AHK I + V
Sbjct: 144 SIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVAN 193
>3d53_A Inorganic pyrophosphatase; seattle structural genomics
center for infectious disease, ssgcid, cytoplasm,
hydrolase, magnesium; 2.20A {Rickettsia prowazekii str}
PDB: 3emj_A* (A:)
Length = 173
Score = 195 bits (498), Expect = 2e-51
Identities = 84/170 (49%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
+ +I +N+ +NV IEI + PIKYE DK+SG L VDRF+ T M YP NYGFIP+T
Sbjct: 4 IKKIKAKANNNE-INVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDT 62
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
LS+DGDPVDV++ + P++PGSVI R IGV+ MED+ G+DEKI+AVP+ + +D I+
Sbjct: 63 LSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIK 122
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
+D+ +++ HFF+HYKDLE GKW K+ GW A +I E + R
Sbjct: 123 ELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGIDR 172
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase);
thermostability, magnesium, hydrolase; 2.70A {Sulfolobus
acidocaldarius} (A:)
Length = 173
Score = 194 bits (495), Expect = 6e-51
Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 1/168 (0%)
Query: 6 EISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLS 65
++S G N+P VNV +EI G IKYE D + GV+ VDR + T M YP NYGFIP TL
Sbjct: 2 KLSPGKNAPDVVNVLVEIPQGS-NIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLE 60
Query: 66 DDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY 125
+DGDP+DV++ ++ + PGSVI RPIG++ M+D+ G D KI+AVP + +I+
Sbjct: 61 EDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDI 120
Query: 126 EDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
D+P A K+ HFF+HYK+LE GK+ K+ GW A I A+KR
Sbjct: 121 NDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKR 168
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter
pylori} PDB: 1ygz_A 2bqy_A (A:)
Length = 173
Score = 187 bits (476), Expect = 9e-49
Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
L ++ + ++ + V IEIS IKYE+DK+SG L+VDR + YP NYGF+PNT
Sbjct: 3 LEKLEVSHDADS-LCVVIEISKH-SNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT 60
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
L DGDPVD ++ S GSV+ R +GV+ MED+ G+DEK++A+P I + ++
Sbjct: 61 LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVK 120
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
+D+ L K++HFF+ YKDLE KW K+ G+E SA K++ +A+K
Sbjct: 121 DIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKA 170
>3i98_A TH-IPP; pyrophosphatase, beta barrel, hydrolase; 1.85A
{Thermococcus thioreducens} PDB: 1ude_A 1twl_A (A:)
Length = 178
Score = 186 bits (473), Expect = 2e-48
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 1 MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60
M +E+ G P V IEI G KYE+DKK+G+L +DR + +P YP +YG I
Sbjct: 1 MNPFHELEPGPEVPEVVYALIEIPKGS-RNKYELDKKTGLLKLDRVLYSPFFYPVDYGII 59
Query: 61 PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120
P T DDGDP D+++ EP+ P ++I RPIG+MKMED G D K+LAVP ++ ++
Sbjct: 60 PQTWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVED--PYFN 117
Query: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
+ DVP A+L ++ HFF+ YK+L+ GK K++GW A + IL A++
Sbjct: 118 DWKDISDVPKAFLDEIAHFFQRYKELQ-GKTTKIEGWGNAEEAKREILRAIEM 169
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,,
hydrolase; 1.30A {Mycobacterium tuberculosis} PDB:
1wcf_A 2uxs_A (A:)
Length = 172
Score = 184 bits (469), Expect = 5e-48
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 3/167 (1%)
Query: 7 ISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSD 66
S + + +V IEI G KYE+D ++G + +DR++ TPM YP +YGFI +TL D
Sbjct: 3 SSHHHHHHMQFDVTIEIPKGQ-RNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGD 61
Query: 67 DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYE 126
DGDP+D ++ +P+ PG +++ RP+G+ +M D+ G D+K+L VP+ + +D +Q
Sbjct: 62 DGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGD--PRWDHVQDIG 119
Query: 127 DVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
DVP L ++HFF HYKDLE GK+ K W A + +V+R
Sbjct: 120 DVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVER 166
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus
HB8} (A:)
Length = 174
Score = 184 bits (468), Expect = 7e-48
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
L + +G +P V++ IE+ G KYE D G + +DR + YPG+YGFIP+T
Sbjct: 3 LKSLPVGDKAPEVVHMVIEVPRG-SGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
L++DGDP+D ++ S+ P+LPG V+ R +G++ MED+ G D K++ V +++ D IQ
Sbjct: 62 LAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAED--QRLDHIQ 119
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLE--DGKWAKLDGWEGVNSAHKIILEAVKR 173
DVP Q+++HFF+ YK LE GKW K+ GW +A + + + R
Sbjct: 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIAR 171
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate
phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A
{Saccharomyces cerevisiae} (A:)
Length = 286
Score = 163 bits (413), Expect = 2e-41
Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%)
Query: 1 MVQLNEISLGSNSPID-VNVFIEISLGGYPIKYEMDKKS-----------GVLVVDRFIS 48
+ ++I L ++ + N+ +EI K E+ K+ G L R
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWT-NAKLEITKEETLNPIIQDTKKGKLRFVRNCF 84
Query: 49 TPMLYPGNYGFIPNTLSD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMK 96
Y NYG P T D D DP+DV+ G V + +G+M
Sbjct: 85 PHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMA 144
Query: 97 MEDDGGIDEKILAVPSKN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG---KWA 152
+ D+G D K++A+ + + + I+ E L+ +F+ YK + ++A
Sbjct: 145 LLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFA 204
Query: 153 KLDGWEGVNSAHKIILEAVKR 173
+ A II E
Sbjct: 205 FSGEAKNKKYALDIIKETHDS 225
>3ejj_A Colony stimulating factor-1; growth factor-receptor complex,
receptor tyrosine kinase, cytokine, 4-helix bundle,
ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 1hmc_A
(A:)
Length = 155
Score = 30.2 bits (68), Expect = 0.16
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 122 IQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNS 162
++++ + P L+K+++FF K+L + W NS
Sbjct: 103 VRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFT-KNCNNS 142
>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
acyltransferase, acetylation; HET: COA PG4; 1.53A
{Escherichia coli} (A:113-759)
Length = 647
Score = 27.3 bits (60), Expect = 1.4
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 94 VMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHY 143
M +GG+DEK+ + + +Y++V ++ K Y
Sbjct: 329 TMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQY 378
>3i26_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll,
envelope protein, glycoprotein, membrane,
transmembrane, virion, cell membrane; HET: NAG BMA MAN;
1.80A {Breda virus serotype 1} PDB: 3i27_A* (A:328-384)
Length = 57
Score = 25.9 bits (56), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 48 STPMLYPGNYGFIPNTL----SDDGDPVDVIMYSSEPILP 83
ST M+Y NYG P + + +DVI SS+P++P
Sbjct: 18 STEMIYEPNYGSCPQFYKLFDTSGNENIDVI-SSSDPLVP 56
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8
(GH-8), (alpha/alpha)6 barrel, structural genomics;
1.65A {Gluconacetobacter xylinus} (A:142-334)
Length = 193
Score = 25.6 bits (56), Expect = 3.9
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 45 RFISTPMLYPGNYGFIPN 62
+ +L PG GF
Sbjct: 4 KAGPYVVLXPGAVGFTKK 21
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.315 0.138 0.403
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,391,253
Number of extensions: 63761
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 20
Length of query: 177
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 94
Effective length of database: 2,150,234
Effective search space: 202121996
Effective search space used: 202121996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.1 bits)