RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] (177 letters) >2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A* (A:) Length = 175 Score = 200 bits (509), Expect = 1e-52 Identities = 82/174 (47%), Positives = 114/174 (65%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L + G + P D+ V IEI PIKYE+DK+SG L VD+F+ST M YP NYG+I +T Sbjct: 2 LLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHT 61 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS DGDPVDV++ + P+ PGSV RP+GV+KM D+ G D K++AVP ++ YD I+ Sbjct: 62 LSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIK 121 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 D+P ++ HFF+HYKDLE GKW K++GWE +A I+ + +R + Sbjct: 122 DVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERAKNK 175 >3lo0_A Inorganic pyrophosphatase; ALS collaborative crystallography, emerald biostructures, hydrolase, structural genomics; 1.95A {Ehrlichia chaffeensis} (A:) Length = 193 Score = 200 bits (509), Expect = 1e-52 Identities = 79/170 (46%), Positives = 114/170 (67%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L+ ++ G N P ++NV IEIS P+KYE DK+ + VDRF+ T M YP NYGFIP+T Sbjct: 24 LDNVTGGDNVPKEINVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFIPHT 83 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 + DGDPVDV++ S P++ G+VI RP+GV+ M D+ G D KILAVP+ + Y++I+ Sbjct: 84 CAGDGDPVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYNNIK 143 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 Y D P ++L + HFF YK LE+ K+ ++GW+ V A K+IL A+ + Sbjct: 144 DYSDFPVSFLNSISHFFTFYKKLEEDKFVSVEGWKDVTVAEKLILSALIK 193 >3fq3_A Inorganic pyrophosphatase:bacterial/archaeal inorganic pyrophosphatase; ssgcid, inorganic phosphatase, hydrolase; 1.90A {Brucella melitensis biovar ABORTUS2308} (A:) Length = 197 Score = 197 bits (503), Expect = 6e-52 Identities = 98/177 (55%), Positives = 135/177 (76%) Query: 1 MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60 + ++ IS+GSN P DVNV IE+ +GG PIKYEMDKK+G L+VDRF+ TPM YPGNYGF+ Sbjct: 21 SMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFV 80 Query: 61 PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120 P+TLS+DGDP+DV++ ++ P++PG VI+ RPIGV+ MED+ G DEKI+AVPS ++T Y+ Sbjct: 81 PHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYE 140 Query: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 I Y D+P L+++ HFF+HYKDLE GKW K+ W + A K I+EA++R + Sbjct: 141 KIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIERAKGK 197 >3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, seattle structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A* (A:) Length = 196 Score = 195 bits (498), Expect = 2e-51 Identities = 81/170 (47%), Positives = 115/170 (67%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 + + G + P D NV IEI P+KYE DK G+LVVDRFI T M YP NYGFIP T Sbjct: 24 FSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQT 83 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS DGDPVDV++ + P+L GSV+ R +G++KM D+ G+D K++AVP + + +++ Sbjct: 84 LSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLK 143 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 S +DVP +++HFF+ YK LE GKW K++GW+G+++AHK I + V Sbjct: 144 SIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVAN 193 >3d53_A Inorganic pyrophosphatase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, hydrolase, magnesium; 2.20A {Rickettsia prowazekii str} PDB: 3emj_A* (A:) Length = 173 Score = 195 bits (498), Expect = 2e-51 Identities = 84/170 (49%), Positives = 116/170 (68%), Gaps = 1/170 (0%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 + +I +N+ +NV IEI + PIKYE DK+SG L VDRF+ T M YP NYGFIP+T Sbjct: 4 IKKIKAKANNNE-INVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDT 62 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS+DGDPVDV++ + P++PGSVI R IGV+ MED+ G+DEKI+AVP+ + +D I+ Sbjct: 63 LSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIK 122 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 +D+ +++ HFF+HYKDLE GKW K+ GW A +I E + R Sbjct: 123 ELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGIDR 172 >1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} (A:) Length = 173 Score = 194 bits (495), Expect = 6e-51 Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 6 EISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLS 65 ++S G N+P VNV +EI G IKYE D + GV+ VDR + T M YP NYGFIP TL Sbjct: 2 KLSPGKNAPDVVNVLVEIPQGS-NIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLE 60 Query: 66 DDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY 125 +DGDP+DV++ ++ + PGSVI RPIG++ M+D+ G D KI+AVP + +I+ Sbjct: 61 EDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDI 120 Query: 126 EDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 D+P A K+ HFF+HYK+LE GK+ K+ GW A I A+KR Sbjct: 121 NDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKR 168 >2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A (A:) Length = 173 Score = 187 bits (476), Expect = 9e-49 Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L ++ + ++ + V IEIS IKYE+DK+SG L+VDR + YP NYGF+PNT Sbjct: 3 LEKLEVSHDADS-LCVVIEISKH-SNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT 60 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 L DGDPVD ++ S GSV+ R +GV+ MED+ G+DEK++A+P I + ++ Sbjct: 61 LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVK 120 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 +D+ L K++HFF+ YKDLE KW K+ G+E SA K++ +A+K Sbjct: 121 DIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKA 170 >3i98_A TH-IPP; pyrophosphatase, beta barrel, hydrolase; 1.85A {Thermococcus thioreducens} PDB: 1ude_A 1twl_A (A:) Length = 178 Score = 186 bits (473), Expect = 2e-48 Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 4/173 (2%) Query: 1 MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60 M +E+ G P V IEI G KYE+DKK+G+L +DR + +P YP +YG I Sbjct: 1 MNPFHELEPGPEVPEVVYALIEIPKGS-RNKYELDKKTGLLKLDRVLYSPFFYPVDYGII 59 Query: 61 PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120 P T DDGDP D+++ EP+ P ++I RPIG+MKMED G D K+LAVP ++ ++ Sbjct: 60 PQTWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVED--PYFN 117 Query: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 + DVP A+L ++ HFF+ YK+L+ GK K++GW A + IL A++ Sbjct: 118 DWKDISDVPKAFLDEIAHFFQRYKELQ-GKTTKIEGWGNAEEAKREILRAIEM 169 >1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A (A:) Length = 172 Score = 184 bits (469), Expect = 5e-48 Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 7 ISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSD 66 S + + +V IEI G KYE+D ++G + +DR++ TPM YP +YGFI +TL D Sbjct: 3 SSHHHHHHMQFDVTIEIPKGQ-RNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGD 61 Query: 67 DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYE 126 DGDP+D ++ +P+ PG +++ RP+G+ +M D+ G D+K+L VP+ + +D +Q Sbjct: 62 DGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGD--PRWDHVQDIG 119 Query: 127 DVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 DVP L ++HFF HYKDLE GK+ K W A + +V+R Sbjct: 120 DVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVER 166 >2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus HB8} (A:) Length = 174 Score = 184 bits (468), Expect = 7e-48 Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L + +G +P V++ IE+ G KYE D G + +DR + YPG+YGFIP+T Sbjct: 3 LKSLPVGDKAPEVVHMVIEVPRG-SGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 L++DGDP+D ++ S+ P+LPG V+ R +G++ MED+ G D K++ V +++ D IQ Sbjct: 62 LAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAED--QRLDHIQ 119 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLE--DGKWAKLDGWEGVNSAHKIILEAVKR 173 DVP Q+++HFF+ YK LE GKW K+ GW +A + + + R Sbjct: 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIAR 171 >1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} (A:) Length = 286 Score = 163 bits (413), Expect = 2e-41 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%) Query: 1 MVQLNEISLGSNSPID-VNVFIEISLGGYPIKYEMDKKS-----------GVLVVDRFIS 48 + ++I L ++ + N+ +EI K E+ K+ G L R Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWT-NAKLEITKEETLNPIIQDTKKGKLRFVRNCF 84 Query: 49 TPMLYPGNYGFIPNTLSD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMK 96 Y NYG P T D D DP+DV+ G V + +G+M Sbjct: 85 PHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMA 144 Query: 97 MEDDGGIDEKILAVPSKN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG---KWA 152 + D+G D K++A+ + + + I+ E L+ +F+ YK + ++A Sbjct: 145 LLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFA 204 Query: 153 KLDGWEGVNSAHKIILEAVKR 173 + A II E Sbjct: 205 FSGEAKNKKYALDIIKETHDS 225 >3ejj_A Colony stimulating factor-1; growth factor-receptor complex, receptor tyrosine kinase, cytokine, 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 1hmc_A (A:) Length = 155 Score = 30.2 bits (68), Expect = 0.16 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 122 IQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNS 162 ++++ + P L+K+++FF K+L + W NS Sbjct: 103 VRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFT-KNCNNS 142 >1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme, acyltransferase, acetylation; HET: COA PG4; 1.53A {Escherichia coli} (A:113-759) Length = 647 Score = 27.3 bits (60), Expect = 1.4 Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 94 VMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHY 143 M +GG+DEK+ + + +Y++V ++ K Y Sbjct: 329 TMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQY 378 >3i26_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope protein, glycoprotein, membrane, transmembrane, virion, cell membrane; HET: NAG BMA MAN; 1.80A {Breda virus serotype 1} PDB: 3i27_A* (A:328-384) Length = 57 Score = 25.9 bits (56), Expect = 3.2 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Query: 48 STPMLYPGNYGFIPNTL----SDDGDPVDVIMYSSEPILP 83 ST M+Y NYG P + + +DVI SS+P++P Sbjct: 18 STEMIYEPNYGSCPQFYKLFDTSGNENIDVI-SSSDPLVP 56 >1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} (A:142-334) Length = 193 Score = 25.6 bits (56), Expect = 3.9 Identities = 5/18 (27%), Positives = 7/18 (38%) Query: 45 RFISTPMLYPGNYGFIPN 62 + +L PG GF Sbjct: 4 KAGPYVVLXPGAVGFTKK 21 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.315 0.138 0.403 Gapped Lambda K H 0.267 0.0591 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,391,253 Number of extensions: 63761 Number of successful extensions: 122 Number of sequences better than 10.0: 1 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 20 Length of query: 177 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 94 Effective length of database: 2,150,234 Effective search space: 202121996 Effective search space used: 202121996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 52 (24.1 bits)