HHsearch alignment for GI: 254780233 and conserved domain: COG0486
>COG0486 ThdF Predicted GTPase [General function prediction only].
Probab=99.05 E-value=2.4e-09 Score=80.58 Aligned_cols=148 Identities=24% Similarity=0.258 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142--32200000388577987096064679999989979999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRD--NQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~--~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTR----D----------vi---ee~i~i~G~pv~l~DTAGiRet~d~ 281 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR----D----------VI---EEDINLNGIPVRLVDTAGIRETDDV 281 (454)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCC----C----------EE---EEEEEECCEEEEEEECCCCCCCCCH
T ss_conf 49998799886799999886678667428999741----0----------37---8999989889999856776667348
Q ss_pred HH-----HHH---HHHCEEEEEEECCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 99-----998---74217899997687886-4789999999972997899997543667402568999998886226730
Q gi|254780233|r 99 VE-----RIL---CMVESVVVLVDAAEGPM-PQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD 169 (624)
Q Consensus 99 Ve-----r~l---~~~DgaiLvVdA~eGv~-~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d 169 (624)
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~--~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~--- 348 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE--LLPKKKPIIVVLNKADLVSKIELESE--------KLA--- 348 (454)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH--HCCCCCCEEEEEECHHCCCCCCCCHH--------HCC---
T ss_conf 99999999999998599899997088777601177887--24368977999960211564321012--------026---
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 110426688788659164674223348641355532102454
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
T Consensus 349 --~~~~~i~iSa~t~-----------~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 349 --NGDAIISISAKTG-----------EGLDALREAIKQLFGK 377 (454)
T ss_pred --CCCCEEEEEECCC-----------CCHHHHHHHHHHHHHH
T ss_conf --7882699982576-----------5799999999999863