HHsearch alignment for GI: 254780233 and conserved domain: COG1100

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only].

Probab=98.54  E-value=3.8e-07  Score=66.13  Aligned_cols=115  Identities=18%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEE---EEEC-CEEEEEECCCCCC
Q ss_conf             43149998546898778899999983961423220000038857798709606467999---9989-9799997289875
Q gi|254780233|r   18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTS---IVWN-DVRINIVDTPGHA   93 (624)
Q Consensus        18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~---~~~~-~~~iNiiDTPGH~   93 (624)
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~--~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~   65 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGD--EFPE----------------GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE   65 (219)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCC--CCCC----------------CCCCCEEECCCCCEEECCCCCEEEEEEECCCHH
T ss_conf             3279999999999889999999647--6765----------------567614540432036226660026767679869


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCC--CCCHHHHHHHHHHHHC----CCCEEEEEECCCCCCCCH
Q ss_conf             407999999874217899997687--8864789999999972----997899997543667402
Q gi|254780233|r   94 DFGGEVERILCMVESVVVLVDAAE--GPMPQTKFVVGKALKI----GLRPIVVVNKVDRSDARA  151 (624)
Q Consensus        94 DF~gEVer~l~~~DgaiLvVdA~e--Gv~~QT~~vl~~A~~~----~l~~IvvINKiDr~~a~~  151 (624)
T Consensus        66 ~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~  128 (219)
T COG1100          66 EYRSLRPEYYRGANGILIVYDSTLRESSDELT-EEWLEELRELAPDDVPILLVGNKIDLFDEQS  128 (219)
T ss_pred             HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
T ss_conf             99998875043897899999762056578899-9999999874668867999697610554301