HHsearch alignment for GI: 254780233 and conserved domain: COG5192
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis].
Probab=97.95 E-value=0.00019 Score=48.47 Aligned_cols=103 Identities=23% Similarity=0.402 Sum_probs=77.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCC-CEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 9998546898778899999983961423220000038857798709-606467999998997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERG-ITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRG-ITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 72 vavvGPpGtGKsTLirSlVrr~tk----~ti~----------~i~GPiTv------vsgK~RRiTflEcp--~Dl~~miD 129 (1077)
T COG5192 72 VAVVGPPGTGKSTLIRSLVRRFTK----QTID----------EIRGPITV------VSGKTRRITFLECP--SDLHQMID 129 (1077)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----HHHH----------CCCCCEEE------EECCEEEEEEEECH--HHHHHHHH
T ss_conf 996369988746899999999877----5420----------36786478------61563578988671--78888876
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EEECCCCC
Q ss_conf 998742178999976878864789999999972997899-99754366
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIV-VVNKVDRS 147 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~Iv-vINKiDr~ 147 (624)
T Consensus 130 -vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 130 -VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred -HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf -88752135788636667042488999998664897247888621133