HHsearch alignment for GI: 254780233 and conserved domain: COG5192

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis].
Probab=97.95  E-value=0.00019  Score=48.47  Aligned_cols=103  Identities=23%  Similarity=0.402  Sum_probs=77.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCC-CEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf             9998546898778899999983961423220000038857798709-606467999998997999972898754079999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERG-ITILAKVTSIVWNDVRINIVDTPGHADFGGEVE  100 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRG-ITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe  100 (624)
T Consensus        72 vavvGPpGtGKsTLirSlVrr~tk----~ti~----------~i~GPiTv------vsgK~RRiTflEcp--~Dl~~miD  129 (1077)
T COG5192          72 VAVVGPPGTGKSTLIRSLVRRFTK----QTID----------EIRGPITV------VSGKTRRITFLECP--SDLHQMID  129 (1077)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH----HHHH----------CCCCCEEE------EECCEEEEEEEECH--HHHHHHHH
T ss_conf             996369988746899999999877----5420----------36786478------61563578988671--78888876


Q ss_pred             HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EEECCCCC
Q ss_conf             998742178999976878864789999999972997899-99754366
Q gi|254780233|r  101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIV-VVNKVDRS  147 (624)
Q Consensus       101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~Iv-vINKiDr~  147 (624)
T Consensus       130 -vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf  176 (1077)
T COG5192         130 -VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF  176 (1077)
T ss_pred             -HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             -88752135788636667042488999998664897247888621133