HHsearch alignment for GI: 254780233 and conserved domain: PRK05291
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed.
Probab=99.19 E-value=3.1e-10 Score=86.36 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 218 ~v~i~G~PN~GKSSL~N~L~~~drAIVS~i---------------pGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE 282 (445)
T PRK05291 218 KVVIAGRPNVGKSSLLNALLGEERAIVTDI---------------AGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVE 282 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCC---------------CCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 699889998768999999857874673189---------------99740402236899998999998997665574588
Q ss_pred -----HHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf -----998---742178999976878864789999999972997899997543667402568999998886226730110
Q gi|254780233|r 101 -----RIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 -----r~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
T Consensus 283 ~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~~~~--------------------~ 340 (445)
T PRK05291 283 KIGIERSRKAIEEADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTGEKI--------------------D 340 (445)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCCCCC--------------------C
T ss_conf 99999999999839999999879988872259999851--7998799985120466534--------------------7
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 42668878865916467422334864135553210245
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
T Consensus 341 ~~~~i~iSak~g-----------~Gi~~L~~~i~~~~~ 367 (445)
T PRK05291 341 GLPVIRISAKTG-----------EGIDELEEALKQLVG 367 (445)
T ss_pred CCCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 897599983788-----------699999999999970