HHsearch alignment for GI: 254780233 and conserved domain: TIGR00750

>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.52  E-value=2.4e-07  Score=67.42  Aligned_cols=169  Identities=27%  Similarity=0.354  Sum_probs=103.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-----------------CEE-CCCCH----HHHHCCCEEEEEEEEEEE
Q ss_conf             99985468987788999999839614232200-----------------000-38857----798709606467999998
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS-----------------ERV-MDCND----LEKERGITILAKVTSIVW   79 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~-----------------~~v-mD~~~----~EreRGITI~a~~~~~~~   79 (624)
T Consensus        41 vG~TG~PGaGKSTl~~~l~~~--lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~l  118 (333)
T TIGR00750        41 VGITGVPGAGKSTLVEKLIME--LRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSL  118 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHH--HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCH
T ss_conf             766468888577799999899--976597689998879759755145456887754422223322898567677666752


Q ss_pred             ----------------CCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             ----------------9979999728987540799999987421789999768788647899999999729978999975
Q gi|254780233|r   80 ----------------NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNK  143 (624)
Q Consensus        80 ----------------~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINK  143 (624)
T Consensus       119 GGls~at~~~~~lldA~G~DVI~vETVGVG--QSEVd-i~~~aDT~v~v~~pg~GDd~Q~i----KaG~mEiaDI~VVNK  191 (333)
T TIGR00750       119 GGLSKATRELVKLLDAAGYDVILVETVGVG--QSEVD-IINMADTFVVVTIPGTGDDVQGI----KAGVMEIADIYVVNK  191 (333)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEECCC--HHHHH-HHHHHCEEEEEECCCCCCHHHHH----HHHHHEEEEEEEEEC
T ss_conf             578799999999998638987999841575--24878-87341505898548878346666----544302324878816


Q ss_pred             CCCCCCCH-HHHHHHHHHHHHH-------C-CCCHHHC---CH---------HHHHHHHHCCEECCCCCCCCCCCCHHHH
Q ss_conf             43667402-5689999988862-------2-6730110---42---------6688788659164674223348641355
Q gi|254780233|r  144 VDRSDARA-DEVINEVFDLFSA-------L-DATDAQL---DF---------PILYGSGRFGWMSDSSDGSRDQGMVPLL  202 (624)
Q Consensus       144 iDr~~a~~-~~v~~ei~dlf~~-------l-~a~de~l---d~---------Pv~~~Sa~~G~~~~~~~~~~~~gl~~Ll  202 (624)
T Consensus       192 aD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G-----------~Gi~EL~  260 (333)
T TIGR00750       192 ADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEG-----------RGIDELW  260 (333)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCC-----------CCCHHHH
T ss_conf             88766589999999988888889999986533334443026551101058996388733568-----------8716789


Q ss_pred             HHHHCCCC
Q ss_conf             53210245
Q gi|254780233|r  203 NLIVDHVP  210 (624)
Q Consensus       203 d~Ii~~iP  210 (624)
T Consensus       261 daI~eH~~  268 (333)
T TIGR00750       261 DAIEEHKK  268 (333)
T ss_pred             HHHHHHHH
T ss_conf             99999999