HHsearch alignment for GI: 254780233 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.90 E-value=2e-08 Score=74.48 Aligned_cols=151 Identities=19% Similarity=0.291 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCC
Q ss_conf 243149998546898778899999983961423220000038857798709606467999998-9979999728987540
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADF 95 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF 95 (624)
T Consensus 187 ~~~p~ValVGYTNAGKSTL~n~L---t~~---~~~~~d~l----------FaTLd~t~r~~~l~~~~~~ll~DTVGFI~~ 250 (351)
T TIGR03156 187 AGVPTVALVGYTNAGKSTLFNAL---TGA---DVYAADQL----------FATLDPTTRRLDLPDGGEVLLTDTVGFIRD 250 (351)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH---HHC---CCCCCCCC----------EEECCCCCCEEECCCCCEEEEEECCCHHHH
T ss_conf 49976999667887789999998---517---76410343----------135367320488799976999815005630
Q ss_pred ---------HHHHHHHHHHHCEEEEEEECCC-CCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf ---------7999999874217899997687-8864789999999972---99789999754366740256899999888
Q gi|254780233|r 96 ---------GGEVERILCMVESVVVLVDAAE-GPMPQTKFVVGKALKI---GLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 96 ---------~gEVer~l~~~DgaiLvVdA~e-Gv~~QT~~vl~~A~~~---~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
T Consensus 251 LP~~Li~aF~sTLee-~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~---~~~~~~~-- 324 (351)
T TIGR03156 251 LPHELVAAFRATLEE-VREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE-- 324 (351)
T ss_pred CCHHHHHHHHHHHHH-HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHH---HHHHHHH--
T ss_conf 886799999999999-9859899998058884789999999999997699999889999670158957---7899873--
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 62267301104266887886591646742233486413555321024
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 325 ---~~~------~~v~ISA~~g-----------~gi~~L~~~I~~~L 351 (351)
T TIGR03156 325 ---GYP------EAVFVSAKTG-----------EGLDLLLEAIAERL 351 (351)
T ss_pred ---CCC------CEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf ---799------8799968999-----------89999999999559