HHsearch alignment for GI: 254780233 and conserved domain: TIGR03156

>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.90  E-value=2e-08  Score=74.48  Aligned_cols=151  Identities=19%  Similarity=0.291  Sum_probs=89.4

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCC
Q ss_conf             243149998546898778899999983961423220000038857798709606467999998-9979999728987540
Q gi|254780233|r   17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADF   95 (624)
Q Consensus        17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF   95 (624)
T Consensus       187 ~~~p~ValVGYTNAGKSTL~n~L---t~~---~~~~~d~l----------FaTLd~t~r~~~l~~~~~~ll~DTVGFI~~  250 (351)
T TIGR03156       187 AGVPTVALVGYTNAGKSTLFNAL---TGA---DVYAADQL----------FATLDPTTRRLDLPDGGEVLLTDTVGFIRD  250 (351)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHH---HHC---CCCCCCCC----------EEECCCCCCEEECCCCCEEEEEECCCHHHH
T ss_conf             49976999667887789999998---517---76410343----------135367320488799976999815005630


Q ss_pred             ---------HHHHHHHHHHHCEEEEEEECCC-CCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             ---------7999999874217899997687-8864789999999972---99789999754366740256899999888
Q gi|254780233|r   96 ---------GGEVERILCMVESVVVLVDAAE-GPMPQTKFVVGKALKI---GLRPIVVVNKVDRSDARADEVINEVFDLF  162 (624)
Q Consensus        96 ---------~gEVer~l~~~DgaiLvVdA~e-Gv~~QT~~vl~~A~~~---~l~~IvvINKiDr~~a~~~~v~~ei~dlf  162 (624)
T Consensus       251 LP~~Li~aF~sTLee-~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~---~~~~~~~--  324 (351)
T TIGR03156       251 LPHELVAAFRATLEE-VREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE--  324 (351)
T ss_pred             CCHHHHHHHHHHHHH-HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHH---HHHHHHH--
T ss_conf             886799999999999-9859899998058884789999999999997699999889999670158957---7899873--


Q ss_pred             HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             62267301104266887886591646742233486413555321024
Q gi|254780233|r  163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       325 ---~~~------~~v~ISA~~g-----------~gi~~L~~~I~~~L  351 (351)
T TIGR03156       325 ---GYP------EAVFVSAKTG-----------EGLDLLLEAIAERL  351 (351)
T ss_pred             ---CCC------CEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf             ---799------8799968999-----------89999999999559