HHsearch alignment for GI: 254780233 and conserved domain: cd00880

>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.72  E-value=1.4e-16  Score=128.13  Aligned_cols=154  Identities=21%  Similarity=0.274  Sum_probs=107.2

Q ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCH------
Q ss_conf             9854689877889999998396142322000003885779870960646799999899-799997289875407------
Q gi|254780233|r   24 IIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFG------   96 (624)
Q Consensus        24 IiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~------   96 (624)
T Consensus         1 ivG~~N~GKStL~N~L~---~~~--~~~vs----------~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~   65 (163)
T cd00880           1 LFGRTNAGKSSLLNALL---GQE--VAIVS----------PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER   65 (163)
T ss_pred             CCCCCCCCHHHHHHHHH---CCC--CCEEC----------CCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHH
T ss_conf             91979989999999995---899--61016----------9899865645899995478659997279852223101689


Q ss_pred             -HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCCHHHCCH
Q ss_conf             -99999987421789999768788647899999999729978999975436674025689-9999888622673011042
Q gi|254780233|r   97 -GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVI-NEVFDLFSALDATDAQLDF  174 (624)
Q Consensus        97 -gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~-~ei~dlf~~l~a~de~ld~  174 (624)
T Consensus        66 ~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~------~~~~~  139 (163)
T cd00880          66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILL------LLLGL  139 (163)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHH------HCCCC
T ss_conf             999999998689899998789997556699999999719742788534206787899999999999987------67998


Q ss_pred             HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             66887886591646742233486413555321024
Q gi|254780233|r  175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       140 ~i~~iSA~~g-----------~gi~~L~~~i~e~L  163 (163)
T cd00880         140 PVIAVSALTG-----------EGIDELREALIEAL  163 (163)
T ss_pred             EEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf             5999978989-----------79999999999519