HHsearch alignment for GI: 254780233 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=353.27 Aligned_cols=181 Identities=42% Similarity=0.652 Sum_probs=168.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998188999999
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHHCCCCH-------HHC
Q ss_conf 998742178999976878864789999999972997899997543667-402568999998886226730-------110
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLFSALDATD-------AQL 172 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf~~l~a~d-------e~l 172 (624)
T Consensus 81 ~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 99864685699998798998789999999997699879999897187756299999999999875321023211012588
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 4266887886591646742233486413555321024542
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
T Consensus 161 ~~piv~iSA~~G-----------~gv~~Lld~i~~~lP~p 189 (189)
T cd00881 161 LVPIVPGSALTG-----------IGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCEEEEEECCCC-----------CCHHHHHHHHHHHCCCC
T ss_conf 775999888678-----------69799999999768799