HHsearch alignment for GI: 254780233 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.07 E-value=2e-09 Score=81.05 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 5 Kiv~iGd~~VGKTsli~r~~~--~~f~~~~~---------~---Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~ 70 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTR--NEFNLDSK---------S---TIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITS 70 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC---------C---CCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 999999999789999999972--98999889---------8---744787899999999999999998999721267899
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9987421789999768788647899999999-7---29978999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
T Consensus 71 ~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V-s~~e~~~~a~-------~~~~~~ 142 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTEEAKAFAE-------KNGLSF 142 (165)
T ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCC-CHHHHHHHHH-------HCCCEE
T ss_conf 87332051489862698899999999999999855577359870234786885788-8999999999-------859979
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 143 ~E~SAk~g-----------~nV~e~F~~l~~~i 164 (165)
T cd01868 143 IETSALDG-----------TNVEEAFKQLLTEI 164 (165)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99678889-----------29899999999986