HHsearch alignment for GI: 254780233 and conserved domain: cd01879
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.48 E-value=5.2e-13 Score=104.64 Aligned_cols=147 Identities=27% Similarity=0.428 Sum_probs=95.5
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH---HH--
Q ss_conf 9854689877889999998396142322000003885779870960646799999899799997289875407---99--
Q gi|254780233|r 24 IIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG---GE-- 98 (624)
Q Consensus 24 IiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~---gE-- 98 (624)
T Consensus 1 ivG~pNvGKSTL~N~L~---g~---~~~vs----~------~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GA---RQKVG----N------WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHH---CC---CCEEC----C------CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHH
T ss_conf 97989888999999995---99---86461----7------898276347889962993799997987412564135678
Q ss_pred HHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCHHHCCH
Q ss_conf 99998---742178999976878864789999999972997899997543667402568-99999888622673011042
Q gi|254780233|r 99 VERIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEV-INEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 99 Ver~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v-~~ei~dlf~~l~a~de~ld~ 174 (624)
T Consensus 65 i~~~~~~~~~~d~vl~vvD~~~-~~-~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~----------~~~~~ 132 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATN-LE-RNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLS----------ELLGV 132 (158)
T ss_pred HHHHHHHHCCCCCEEEEEECCH-HH-HHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHH----------HHCCC
T ss_conf 9999998517871799977740-67-768999999865998899940277655225466799999----------87199
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 133 ~ii~iSA~~g-----------~Gi~~L~~~i~el~ 156 (158)
T cd01879 133 PVVPTSARKG-----------EGIDELKDAIAELA 156 (158)
T ss_pred CEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 4899987789-----------79999999999986