HHsearch alignment for GI: 254780233 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=0 Score=381.50 Aligned_cols=190 Identities=30% Similarity=0.368 Sum_probs=171.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHH
T ss_conf 79999960588698999999998866344441120010054666505886144189996088169962689607788899
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCC--CHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 999874217899997687886478999999997299789-99975436674--025689999988862267301104266
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSDA--RADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~a--~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
T Consensus 83 i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~--~~p~ 160 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD--NTPI 160 (195)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCEE
T ss_conf 86351136268998527787478999999999809996279996877898789999999999999984299955--6829
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 887886591646742233486413555321024542
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
T Consensus 161 ip~Sa~~g~~~~~~~-~~~~~i~~Lldai~~~iP~P 195 (195)
T cd01884 161 VRGSALKALEGDDPN-KWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEEEHHHHHCCCCCC-CCCCCHHHHHHHHHHHCCCC
T ss_conf 997738753578887-55369999999999648998