HHsearch alignment for GI: 254780233 and conserved domain: cd01887

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.98  E-value=1.2e-31  Score=226.93  Aligned_cols=160  Identities=31%  Similarity=0.422  Sum_probs=129.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEE---EECCEEEEEECCCCCCCCHH
Q ss_conf             499985468987788999999839614232200000388577987096064679999---98997999972898754079
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSI---VWNDVRINIVDTPGHADFGG   97 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~---~~~~~~iNiiDTPGH~DF~g   97 (624)
T Consensus         2 ~VaivG~~n~GKSTL~n~L~~~~--------~~--------~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~   65 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTN--------VA--------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN   65 (168)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCC--------CC--------EEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHH
T ss_conf             89999489985989999985867--------50--------451698168715399998825887189998998167799


Q ss_pred             HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf             99999874217899997687886478999999997299789999754366740256899999888622673011042668
Q gi|254780233|r   98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL  177 (624)
Q Consensus        98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~  177 (624)
T Consensus        66 ~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~iI  144 (168)
T cd01887          66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ-GEDEWGGDVQIV  144 (168)
T ss_pred             HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CHHHCCCCCEEE
T ss_conf             9999986268899998646675458999999998769978999989308987989999999997545-245528987599


Q ss_pred             HHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             8788659164674223348641355532102
Q gi|254780233|r  178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH  208 (624)
Q Consensus       178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~  208 (624)
T Consensus       145 pvSA~tG-----------~gi~~L~~~i~~~  164 (168)
T cd01887         145 PTSAKTG-----------EGIDDLLEAILLL  164 (168)
T ss_pred             EEECCCC-----------CCHHHHHHHHHHH
T ss_conf             9989999-----------8999999999999