HHsearch alignment for GI: 254780233 and conserved domain: cd01896

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.27  E-value=1.2e-10  Score=89.06  Aligned_cols=146  Identities=18%  Similarity=0.243  Sum_probs=92.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC-----
Q ss_conf             499985468987788999999839614232200000388577987096064679999989979999728987540-----
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF-----   95 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF-----   95 (624)
T Consensus         2 ~V~LVG~PN~GKSTLln~L---T~a~~~---v~~----yp------fTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~   65 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKL---TNTKSE---VAA----YE------FTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK   65 (233)
T ss_pred             EEEEECCCCCCHHHHHHHH---HCCCCC---CCC----CC------CCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCC
T ss_conf             5999999999999999999---789954---369----89------7875747779998998999996730024633332


Q ss_pred             --HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH--------------------------------------------
Q ss_conf             --7999999874217899997687886478999999--------------------------------------------
Q gi|254780233|r   96 --GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGK--------------------------------------------  129 (624)
Q Consensus        96 --~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~--------------------------------------------  129 (624)
T Consensus        66 g~g~~~l~~~r~aD~il~VvD~~~~~~-~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~i  144 (233)
T cd01896          66 GRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAI  144 (233)
T ss_pred             CHHHHHHHHHHHCCEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             068999999875899999984798266-7899999998605110357876257771358678604566666888999999


Q ss_pred             ------------------------HHHCC---CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf             ------------------------99729---978999975436674025689999988862267301104266887886
Q gi|254780233|r  130 ------------------------ALKIG---LRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGR  182 (624)
Q Consensus       130 ------------------------A~~~~---l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~  182 (624)
T Consensus       145 l~e~~i~~a~v~i~~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~--e----e~~~~~-~--------~~~~i~ISA~  209 (233)
T cd01896         145 LREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI--E----ELDLLA-R--------QPNSVVISAE  209 (233)
T ss_pred             HHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCH--H----HHHHHH-C--------CCCEEEEECC
T ss_conf             99827676437860578888989987357676737999974036998--9----999864-6--------7985999888


Q ss_pred             CCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             591646742233486413555321024
Q gi|254780233|r  183 FGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       183 ~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       210 ~g-----------~gld~L~~~I~~~L  225 (233)
T cd01896         210 KG-----------LNLDELKERIWDKL  225 (233)
T ss_pred             CC-----------CCHHHHHHHHHHHH
T ss_conf             89-----------89899999999983