HHsearch alignment for GI: 254780233 and conserved domain: cd01896
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.27 E-value=1.2e-10 Score=89.06 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=92.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC-----
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979999728987540-----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF----- 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF----- 95 (624)
T Consensus 2 ~V~LVG~PN~GKSTLln~L---T~a~~~---v~~----yp------fTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKL---TNTKSE---VAA----YE------FTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC---CCC----CC------CCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCC
T ss_conf 5999999999999999999---789954---369----89------7875747779998998999996730024633332
Q ss_pred --HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH--------------------------------------------
Q ss_conf --7999999874217899997687886478999999--------------------------------------------
Q gi|254780233|r 96 --GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGK-------------------------------------------- 129 (624)
Q Consensus 96 --~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~-------------------------------------------- 129 (624)
T Consensus 66 g~g~~~l~~~r~aD~il~VvD~~~~~~-~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~i 144 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAI 144 (233)
T ss_pred CHHHHHHHHHHHCCEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 068999999875899999984798266-7899999998605110357876257771358678604566666888999999
Q ss_pred ------------------------HHHCC---CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf ------------------------99729---978999975436674025689999988862267301104266887886
Q gi|254780233|r 130 ------------------------ALKIG---LRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGR 182 (624)
Q Consensus 130 ------------------------A~~~~---l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~ 182 (624)
T Consensus 145 l~e~~i~~a~v~i~~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~--e----e~~~~~-~--------~~~~i~ISA~ 209 (233)
T cd01896 145 LREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI--E----ELDLLA-R--------QPNSVVISAE 209 (233)
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCH--H----HHHHHH-C--------CCCEEEEECC
T ss_conf 99827676437860578888989987357676737999974036998--9----999864-6--------7985999888
Q ss_pred CCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 591646742233486413555321024
Q gi|254780233|r 183 FGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 183 ~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 210 ~g-----------~gld~L~~~I~~~L 225 (233)
T cd01896 210 KG-----------LNLDELKERIWDKL 225 (233)
T ss_pred CC-----------CCHHHHHHHHHHHH
T ss_conf 89-----------89899999999983