HHsearch alignment for GI: 254780233 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.05 E-value=0.12 Score=29.95 Aligned_cols=93 Identities=24% Similarity=0.352 Sum_probs=51.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC-HHH
Q ss_conf 4999854689877889999998396142-32200000388577987096064679999989979999728987540-799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRD-NQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF-GGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~-~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF-~gE 98 (624)
T Consensus 27 iv~ilGpNGaGKSTllk~i---~G~l~p~~G~-------------------------i~~~g~~~--~~~pq~~~LSGGq 76 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKIL---AGQLIPNGDN-------------------------DEWDGITP--VYKPQYIDLSGGE 76 (177)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCCC-------------------------EEECCCCE--ECCCCCCCCCHHH
T ss_conf 9999899999999999999---6886788994-------------------------66668612--2155515079899
Q ss_pred HHHHHH----HHCEEEEEEE-CCCCCCHHHHHHH----HHHHHCCCCEEEEEEC
Q ss_conf 999987----4217899997-6878864789999----9999729978999975
Q gi|254780233|r 99 VERILC----MVESVVVLVD-AAEGPMPQTKFVV----GKALKIGLRPIVVVNK 143 (624)
Q Consensus 99 Ver~l~----~~DgaiLvVd-A~eGv~~QT~~vl----~~A~~~~l~~IvvINK 143 (624)
T Consensus 77 rQRv~iAral~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsH 130 (177)
T cd03222 77 LQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999823999999748865389999999999999999965977999858