HHsearch alignment for GI: 254780233 and conserved domain: cd03222

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.05  E-value=0.12  Score=29.95  Aligned_cols=93  Identities=24%  Similarity=0.352  Sum_probs=51.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC-HHH
Q ss_conf             4999854689877889999998396142-32200000388577987096064679999989979999728987540-799
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRD-NQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF-GGE   98 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~-~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF-~gE   98 (624)
T Consensus        27 iv~ilGpNGaGKSTllk~i---~G~l~p~~G~-------------------------i~~~g~~~--~~~pq~~~LSGGq   76 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKIL---AGQLIPNGDN-------------------------DEWDGITP--VYKPQYIDLSGGE   76 (177)
T ss_pred             EEEEECCCCCCHHHHHHHH---HCCCCCCCCC-------------------------EEECCCCE--ECCCCCCCCCHHH
T ss_conf             9999899999999999999---6886788994-------------------------66668612--2155515079899


Q ss_pred             HHHHHH----HHCEEEEEEE-CCCCCCHHHHHHH----HHHHHCCCCEEEEEEC
Q ss_conf             999987----4217899997-6878864789999----9999729978999975
Q gi|254780233|r   99 VERILC----MVESVVVLVD-AAEGPMPQTKFVV----GKALKIGLRPIVVVNK  143 (624)
Q Consensus        99 Ver~l~----~~DgaiLvVd-A~eGv~~QT~~vl----~~A~~~~l~~IvvINK  143 (624)
T Consensus        77 rQRv~iAral~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsH  130 (177)
T cd03222          77 LQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH  130 (177)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             999999999823999999748865389999999999999999965977999858