HHsearch alignment for GI: 254780233 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.04  E-value=0.067  Score=31.68  Aligned_cols=114  Identities=19%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf             1499985468987788999999839614-232200--0-00388577987096064679999989979999728987540
Q gi|254780233|r   20 RNIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF   95 (624)
Q Consensus        20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF   95 (624)
T Consensus        29 ~~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNi-------LS   98 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI-------LS   98 (173)
T ss_pred             CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHC-------CC
T ss_conf             999999999980999999996---66667999899999993328998984208999088836777589976-------76


Q ss_pred             HHHHHHHH--H--HHCEEEEEEE-CCCCCCHHHHHHHHHHHH-C--CCCEEEEEEC
Q ss_conf             79999998--7--4217899997-687886478999999997-2--9978999975
Q gi|254780233|r   96 GGEVERIL--C--MVESVVVLVD-AAEGPMPQTKFVVGKALK-I--GLRPIVVVNK  143 (624)
Q Consensus        96 ~gEVer~l--~--~~DgaiLvVd-A~eGv~~QT~~vl~~A~~-~--~l~~IvvINK  143 (624)
T Consensus        99 GGQkQRvalARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH  154 (173)
T cd03246          99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH  154 (173)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             99999999999982799999996876689989999999999978648989999847