HHsearch alignment for GI: 254780233 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.04 E-value=0.067 Score=31.68 Aligned_cols=114 Identities=19% Similarity=0.266 Sum_probs=59.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 1499985468987788999999839614-232200--0-00388577987096064679999989979999728987540
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
T Consensus 29 ~~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNi-------LS 98 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI-------LS 98 (173)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHC-------CC
T ss_conf 999999999980999999996---66667999899999993328998984208999088836777589976-------76
Q ss_pred HHHHHHHH--H--HHCEEEEEEE-CCCCCCHHHHHHHHHHHH-C--CCCEEEEEEC
Q ss_conf 79999998--7--4217899997-687886478999999997-2--9978999975
Q gi|254780233|r 96 GGEVERIL--C--MVESVVVLVD-AAEGPMPQTKFVVGKALK-I--GLRPIVVVNK 143 (624)
Q Consensus 96 ~gEVer~l--~--~~DgaiLvVd-A~eGv~~QT~~vl~~A~~-~--~l~~IvvINK 143 (624)
T Consensus 99 GGQkQRvalARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH 154 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999999982799999996876689989999999999978648989999847