HHsearch alignment for GI: 254780233 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.10 E-value=3.3e-09 Score=79.64 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=99.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCCHHHHH
Q ss_conf 9998546898778899999983961423220000038857798709606467999998-997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~~y~~------------Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~~l~~ 70 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM------------TTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVS 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCC------------CCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 9999959958899999999788866888888------------6457889999997899799999997999840067899
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9987421789999768788647899999999---72997899997543667402568-9999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL---KIGLRPIVVVNKVDRSDARADEV-INEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v-~~ei~dlf~~l~a~de~ld~Pv 176 (624)
T Consensus 71 ~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r--~V~~~e~~~~a~-------~~~~~~ 141 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQAFAQ-------ANQLKF 141 (164)
T ss_pred HHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHHHHHH-------HCCCEE
T ss_conf 99764268999970774668999999999999766898689998722445245--569999999999-------889989
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 88788659164674223348641355532102
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
T Consensus 142 ~E~SAk~g-----------~nV~e~F~~lar~ 162 (164)
T cd04101 142 FKTSALRG-----------VGYEEPFESLARA 162 (164)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 99866889-----------0989999999998